Variant report

Variant	nsv967037
Chromosome Location	chr3:90150991-90195660
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:90184075..90187070-chr3:90192628..90194644,2	MCF-7	breast:
2	chr3:90184075..90187070-chr3:90192628..90194644,2	MCF-7	breast:

Extended variants
information (count: 1759 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1759 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190446331	chr3:90151124-90151125	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148217574	chr3:90151129-90151130	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141182072	chr3:90151133-90151134	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs533540583	chr3:90151156-90151157	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs535214553	chr3:90151182-90151183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550686367	chr3:90151193-90151194	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113439326	chr3:90151214-90151215	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs563787614	chr3:90151245-90151246	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs530967847	chr3:90151342-90151343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182269319	chr3:90151417-90151418	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs116284288	chr3:90151444-90151445	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528405704	chr3:90151457-90151458	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186164913	chr3:90151466-90151467	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150745628	chr3:90151471-90151472	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538806753	chr3:90151474-90151475	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557519089	chr3:90151494-90151495	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190626158	chr3:90151499-90151500	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568605886	chr3:90151513-90151514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71621562	chr3:90151537-90151538	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs375674147	chr3:90151538-90151539	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs58156188	chr3:90151560-90151561	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374140174	chr3:90151566-90151567	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368295224	chr3:90151568-90151569	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs34385997	chr3:90151569-90151570	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374736935	chr3:90151644-90151645	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572810071	chr3:90151648-90151649	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555633349	chr3:90151669-90151670	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368815372	chr3:90151699-90151700	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572441195	chr3:90151721-90151722	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373469301	chr3:90151744-90151745	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs533787422	chr3:90151748-90151749	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62277676	chr3:90151763-90151764	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs545892300	chr3:90151774-90151775	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143249342	chr3:90151861-90151862	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs576301050	chr3:90151891-90151892	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573941967	chr3:90151906-90151907	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs376709207	chr3:90151923-90151924	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376653006	chr3:90151975-90151976	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544262923	chr3:90151976-90151977	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs563047714	chr3:90152001-90152002	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs147530990	chr3:90152002-90152003	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547445039	chr3:90152006-90152007	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140242010	chr3:90152012-90152013	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs373928051	chr3:90152096-90152097	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs145345138	chr3:90152152-90152153	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569858805	chr3:90152154-90152155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535640250	chr3:90152172-90152173	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549195624	chr3:90152193-90152194	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566006110	chr3:90152203-90152204	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs114496482	chr3:90152209-90152210	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90136600-90156400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:90140000-90151800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:90145800-90153400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:90146000-90154000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:90150600-90152600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:90151800-90152000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:90152600-90154400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:90153400-90153600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr3:90153600-90159000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:90154400-90155200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:90155200-90157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:90155200-90159200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:90157400-90161200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:90159000-90160200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr3:90159200-90160800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr3:90159600-90160600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:90160200-90160800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:90160800-90162400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:90160800-90164200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:90161200-90161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:90161600-90162000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:90162000-90164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:90162400-90164200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:90163200-90167800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:90164200-90167200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:90164200-90167800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:90164400-90165600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:90165600-90166000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:90166000-90169800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:90167200-90168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:90167800-90169600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr3:90168200-90169200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
33	chr3:90170000-90170400	Enhancers	Brain Germinal Matrix	brain
34	chr3:90172200-90175000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:90175000-90175800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:90175800-90176600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:90176600-90184000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:90176800-90211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:90178400-90178800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr3:90178800-90185400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:90181200-90182600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:90183800-90185000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:90183800-90186800	Enhancers	Stomach Mucosa	stomach
44	chr3:90184000-90184400	Enhancers	Small Intestine	intestine
45	chr3:90184000-90184600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:90184000-90185000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:90184200-90185800	Enhancers	Duodenum Mucosa	Duodenum
48	chr3:90184400-90186400	Weak transcription	Small Intestine	intestine
49	chr3:90184600-90184800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr3:90184600-90185000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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