Variant report

Variant	nsv967042
Chromosome Location	chr3:98376947-98379521
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ST3GAL6-5	chr3:98376584-98377010	NONHSAT090808

Extended variants
information (count: 92 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77930671	chr3:98376990-98376991	Active TSS Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs113058878	chr3:98377011-98377012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs150839020	chr3:98377067-98377068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs569937542	chr3:98377080-98377081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535763405	chr3:98377082-98377083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs555559073	chr3:98377206-98377207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs572148245	chr3:98377251-98377252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs139305762	chr3:98377259-98377260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557555640	chr3:98377260-98377261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs577698246	chr3:98377277-98377278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs542988986	chr3:98377284-98377285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs201665406	chr3:98377310-98377311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113669699	chr3:98377315-98377316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs112004385	chr3:98377343-98377344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577156062	chr3:98377357-98377358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs565891372	chr3:98377358-98377359	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs531846636	chr3:98377375-98377376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs542122682	chr3:98377423-98377424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs556539909	chr3:98377469-98377470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149994079	chr3:98377486-98377487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527872450	chr3:98377521-98377522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191457308	chr3:98377567-98377568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs184430226	chr3:98377613-98377614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs368298537	chr3:98377647-98377648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550163226	chr3:98377649-98377650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189774734	chr3:98377730-98377731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs3796136	chr3:98377766-98377767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549293319	chr3:98377774-98377775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566002962	chr3:98377775-98377776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112201283	chr3:98377785-98377786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs3796137	chr3:98377789-98377790	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs539172380	chr3:98377797-98377798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs557956784	chr3:98377811-98377812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577632422	chr3:98377813-98377814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs111644622	chr3:98377827-98377828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146542732	chr3:98377836-98377837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77122967	chr3:98377842-98377843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs3796138	chr3:98377862-98377863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs139987916	chr3:98377872-98377873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562228883	chr3:98377927-98377928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371345654	chr3:98377962-98377963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs572727048	chr3:98377992-98377993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375888081	chr3:98378005-98378006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541236574	chr3:98378020-98378021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564716871	chr3:98378024-98378025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs533423555	chr3:98378030-98378031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs367949821	chr3:98378073-98378074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544748109	chr3:98378111-98378112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs7614764	chr3:98378157-98378158	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs563817725	chr3:98378204-98378205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	21858020	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98375600-98377400	Enhancers	Fetal Thymus	thymus
2	chr3:98376000-98377000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr3:98377400-98379000	Weak transcription	Fetal Thymus	thymus

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