Variant report

Variant	nsv967184
Chromosome Location	chr3:87918245-87937811
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:64415275..64417539-chr3:87924606..87926106,2	MCF-7	breast:

Extended variants
information (count: 618 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:618 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576743476	chr3:87918299-87918300	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs543511059	chr3:87918316-87918317	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs537157179	chr3:87918408-87918409	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs145664623	chr3:87918433-87918434	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs9812260	chr3:87918445-87918446	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs528849385	chr3:87918534-87918535	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs144352171	chr3:87918535-87918536	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs377707331	chr3:87918537-87918538	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs2938262	chr3:87918538-87918539	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs2938263	chr3:87918540-87918541	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs199785231	chr3:87918541-87918542	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs990352	chr3:87918558-87918559	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs4038035	chr3:87918562-87918563	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs11926445	chr3:87918566-87918567	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs990351	chr3:87918570-87918571	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs149411929	chr3:87918574-87918575	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs60421479	chr3:87918578-87918579	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs75953265	chr3:87918582-87918583	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs201813948	chr3:87918585-87918586	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs58581200	chr3:87918586-87918587	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs375657302	chr3:87918589-87918590	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs533253888	chr3:87918596-87918597	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs113301497	chr3:87918604-87918605	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs67632871	chr3:87918605-87918606	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs551415107	chr3:87918608-87918609	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs4038036	chr3:87918624-87918625	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs569500388	chr3:87918632-87918633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs530638357	chr3:87918716-87918717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs549815169	chr3:87918728-87918729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs180974472	chr3:87918761-87918762	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs113032682	chr3:87918764-87918765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs547767241	chr3:87918792-87918793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs541685950	chr3:87918817-87918818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs140306366	chr3:87918852-87918853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs375290494	chr3:87918904-87918905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs564542511	chr3:87918945-87918946	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs540108700	chr3:87918978-87918979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs558181597	chr3:87918985-87918986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs186238492	chr3:87919030-87919031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs537645658	chr3:87919040-87919041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs192298016	chr3:87919058-87919059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs200516056	chr3:87919085-87919086	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs183250951	chr3:87919096-87919097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs370767010	chr3:87919109-87919110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs367584868	chr3:87919124-87919125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs559281005	chr3:87919154-87919155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs141131144	chr3:87919200-87919201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs7638490	chr3:87919203-87919204	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs563440568	chr3:87919284-87919285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs530576252	chr3:87919286-87919287	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87917200-87925800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87917400-87918600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:87918200-87921000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:87918600-87920200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr3:87920400-87921200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr3:87921200-87922400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:87922400-87922600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr3:87924200-87924800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr3:87924800-87930000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:87925800-87928000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:87926800-87927000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:87927000-87928400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:87928000-87930800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:87928400-87930800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:87930000-87930800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr3:87930200-87930600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:87930200-87930600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr3:87930200-87930600	ZNF genes & repeats	Gastric	stomach
19	chr3:87930800-87932000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:87930800-87932200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:87932000-87932800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:87932200-87932400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:87936400-87942600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:87937600-87941400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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