Variant report

Variant	nsv967226
Chromosome Location	chr3:90187299-90191826
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:157 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149732057	chr3:90187330-90187331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs559669879	chr3:90187337-90187338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs556942475	chr3:90187389-90187390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs35671260	chr3:90187391-90187392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs146754511	chr3:90187395-90187396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs116073724	chr3:90187408-90187409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140374574	chr3:90187448-90187449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373671647	chr3:90187501-90187502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566258228	chr3:90187552-90187553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535255573	chr3:90187571-90187572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552060512	chr3:90187642-90187643	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs571971393	chr3:90187698-90187699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs537792723	chr3:90187701-90187702	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs7427318	chr3:90187722-90187723	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs112471335	chr3:90187782-90187783	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs182642899	chr3:90187794-90187795	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs201117178	chr3:90187799-90187800	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs541400908	chr3:90187801-90187802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs397874520	chr3:90187813-90187814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs576022924	chr3:90187836-90187837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs186965294	chr3:90187934-90187935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs530150413	chr3:90187942-90187943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548696610	chr3:90187943-90187944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571873363	chr3:90188193-90188194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540838135	chr3:90188227-90188228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563994072	chr3:90188235-90188236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577857993	chr3:90188284-90188285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs115234420	chr3:90188314-90188315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs563520981	chr3:90188321-90188322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191474226	chr3:90188343-90188344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs531051514	chr3:90188354-90188355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs367810504	chr3:90188355-90188356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs182060611	chr3:90188399-90188400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145561758	chr3:90188451-90188452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559389542	chr3:90188473-90188474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs528648306	chr3:90188485-90188486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551998999	chr3:90188531-90188532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs137867199	chr3:90188535-90188536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs528307780	chr3:90188544-90188545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76923954	chr3:90188549-90188550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs577682123	chr3:90188579-90188580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs71105147	chr3:90188633-90188634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs397990522	chr3:90188651-90188652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551284698	chr3:90188715-90188716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552312790	chr3:90188727-90188728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569521788	chr3:90188745-90188746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535446793	chr3:90188802-90188803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555002613	chr3:90188816-90188817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149036726	chr3:90188850-90188851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs193039470	chr3:90188905-90188906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90176800-90211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:90184600-90191600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:90186600-90187600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:90187600-90187800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:90191600-90191800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:90191800-90192200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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