Variant report

Variant	nsv967303
Chromosome Location	chr7:57296897-57316721
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:192 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568549047	chr7:57306462-57306463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs145140727	chr7:57306463-57306464	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs547827225	chr7:57306464-57306465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs373392843	chr7:57306474-57306475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs146877381	chr7:57306496-57306497	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs140739847	chr7:57306508-57306509	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs552584732	chr7:57306511-57306512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs150451604	chr7:57306528-57306529	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs371826115	chr7:57306572-57306573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs11135631	chr7:57306577-57306578	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs538030422	chr7:57306598-57306599	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs376478949	chr7:57306601-57306602	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs11772485	chr7:57306624-57306625	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs574615023	chr7:57306639-57306640	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs181237320	chr7:57306728-57306729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs561087741	chr7:57306729-57306730	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs573330203	chr7:57306734-57306735	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs59329904	chr7:57306744-57306745	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs76360841	chr7:57306777-57306778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs575381366	chr7:57310239-57310240	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs542425223	chr7:57310256-57310257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs367562946	chr7:57310302-57310303	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs561258013	chr7:57310323-57310324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs145753404	chr7:57310326-57310327	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs541448939	chr7:57310396-57310397	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs559776836	chr7:57310419-57310420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs78817144	chr7:57310428-57310429	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs551888525	chr7:57310482-57310483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs570017651	chr7:57310510-57310511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs531153917	chr7:57310530-57310531	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs56176823	chr7:57310571-57310572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs567958473	chr7:57310587-57310588	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs77755644	chr7:57310588-57310589	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs550346950	chr7:57310646-57310647	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs149317035	chr7:57310676-57310677	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs144628519	chr7:57310711-57310712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs557036761	chr7:57310713-57310714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs73120370	chr7:57310756-57310757	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs536449534	chr7:57310769-57310770	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs554430715	chr7:57310770-57310771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs185512390	chr7:57310778-57310779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs4412321	chr7:57310793-57310794	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs369978533	chr7:57310832-57310833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs112445414	chr7:57310863-57310864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs59334165	chr7:57310865-57310866	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs578080343	chr7:57310866-57310867	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs189922222	chr7:57310911-57310912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs563804075	chr7:57310943-57310944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs200191682	chr7:57310955-57310956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs530868258	chr7:57310999-57311000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57306400-57306800	ZNF genes & repeats	Fetal Kidney	kidney
2	chr7:57306600-57306800	ZNF genes & repeats	Pancreas	Pancrea
3	chr7:57310200-57313400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr7:57314200-57315000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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