Variant report

Variant	nsv967304
Chromosome Location	chr7:57317907-57320728
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527496003	chr7:57317963-57317964	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs552307531	chr7:57318019-57318020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs188137546	chr7:57318022-57318023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs536607395	chr7:57318114-57318115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs10247921	chr7:57318132-57318133	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs4131194	chr7:57318136-57318137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs550589641	chr7:57318165-57318166	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs568896591	chr7:57318209-57318210	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs536212103	chr7:57318248-57318249	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs555815124	chr7:57318272-57318273	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs4131195	chr7:57318298-57318299	Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs181322517	chr7:57318307-57318308	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs534140547	chr7:57318318-57318319	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs140036638	chr7:57318342-57318343	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs186588566	chr7:57318391-57318392	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs370841235	chr7:57318421-57318422	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs544870592	chr7:57318461-57318462	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs563138356	chr7:57318462-57318463	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs4131196	chr7:57318463-57318464	Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs541796979	chr7:57318494-57318495	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs145551054	chr7:57318508-57318509	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs527369034	chr7:57318529-57318530	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs552132596	chr7:57318611-57318612	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs189377918	chr7:57318717-57318718	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs531542071	chr7:57318718-57318719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs111609405	chr7:57318742-57318743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs13240948	chr7:57318750-57318751	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs536250719	chr7:57318760-57318761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs548140226	chr7:57318799-57318800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs182055188	chr7:57318803-57318804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs186592637	chr7:57318805-57318806	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs555641231	chr7:57318891-57318892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs577381012	chr7:57318893-57318894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs538024177	chr7:57318916-57318917	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs556897732	chr7:57318997-57318998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs575143761	chr7:57319055-57319056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs4373471	chr7:57319064-57319065	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs553799181	chr7:57319086-57319087	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs572073278	chr7:57319092-57319093	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs545867529	chr7:57319098-57319099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs528311626	chr7:57319101-57319102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs4373472	chr7:57319112-57319113	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs531556757	chr7:57319122-57319123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs191181949	chr7:57319123-57319124	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs561658174	chr7:57319128-57319129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs529143539	chr7:57319139-57319140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs183307957	chr7:57319145-57319146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs548227177	chr7:57319180-57319181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs566838976	chr7:57319211-57319212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs185503170	chr7:57319237-57319238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Williams Syndrome	20824207	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57317800-57320000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr7:57318200-57318600	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links