Variant report

Variant	nsv967469
Chromosome Location	chr7:107155013-107168166
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:107165019..107167823-chr7:107168530..107171856,3	K562	blood:
2	chr7:107165422..107167408-chr7:107219933..107221750,2	K562	blood:
3	chr7:107162501..107165341-chr7:107166519..107168432,2	K562	blood:
4	chr7:107166785..107169332-chr7:107203065..107207052,3	MCF-7	breast:
5	chr7:107162501..107165341-chr7:107166519..107168432,2	K562	blood:
6	chr7:107164671..107167823-chr7:107168530..107171856,3	K562	blood:
7	chr7:107156199..107157888-chr7:107162043..107164824,2	K562	blood:
8	chr7:107165516..107168282-chr7:107172051..107174509,2	MCF-7	breast:
9	chr7:107166936..107168955-chr7:107170505..107173136,2	MCF-7	breast:
10	chr7:107156199..107157888-chr7:107162043..107164824,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272854	chromatin interactions
ENSG00000164597	chromatin interactions
ENSG00000105865	chromatin interactions
ENSG00000075790	chromatin interactions

Extended variants
information (count: 549 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377356318	chr7:107155036-107155037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs574658306	chr7:107155063-107155064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184579262	chr7:107155065-107155066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs563783837	chr7:107155096-107155097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs531661367	chr7:107155119-107155120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143665818	chr7:107155125-107155126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs552536537	chr7:107155135-107155136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550067381	chr7:107155179-107155180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559449732	chr7:107155192-107155193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs189042983	chr7:107155209-107155210	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191932237	chr7:107155214-107155215	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567579344	chr7:107155222-107155223	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536433051	chr7:107155256-107155257	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184799270	chr7:107155274-107155275	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569728746	chr7:107155293-107155294	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538394636	chr7:107155304-107155305	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs530586238	chr7:107155348-107155349	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558627304	chr7:107155471-107155472	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571681533	chr7:107155496-107155497	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534332933	chr7:107155500-107155501	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs57384395	chr7:107155526-107155527	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs574820960	chr7:107155538-107155539	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547406664	chr7:107155540-107155541	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs151056108	chr7:107155603-107155604	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs563773742	chr7:107155615-107155616	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189298805	chr7:107155649-107155650	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140992914	chr7:107155653-107155654	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559817691	chr7:107155714-107155715	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs58800910	chr7:107155737-107155738	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs73187396	chr7:107155759-107155760	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs180957350	chr7:107155794-107155795	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs7785165	chr7:107155826-107155827	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs74365901	chr7:107155841-107155842	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185841699	chr7:107155844-107155845	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538849659	chr7:107155895-107155896	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544045478	chr7:107156020-107156021	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546925638	chr7:107156029-107156030	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551952690	chr7:107156050-107156051	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189333958	chr7:107156060-107156061	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181744527	chr7:107156092-107156093	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs577331775	chr7:107156103-107156104	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs67754921	chr7:107156120-107156121	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs111940085	chr7:107156225-107156226	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs377027158	chr7:107156246-107156247	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs552266572	chr7:107156249-107156250	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs574785186	chr7:107156255-107156256	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs537308120	chr7:107156284-107156285	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs116018670	chr7:107156285-107156286	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs3801952	chr7:107156298-107156299	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs556390039	chr7:107156314-107156315	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Multiple myeloma	16461302	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:216 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107123200-107155800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:107123600-107166200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:107126800-107184800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:107127400-107175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:107130800-107163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:107131400-107179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:107131800-107175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:107136000-107165800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:107137000-107166200	Weak transcription	K562	blood
10	chr7:107141600-107166000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:107142000-107167000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:107144400-107162000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:107144400-107166400	Weak transcription	NH-A	brain
14	chr7:107144800-107185000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:107146000-107185000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:107146400-107183800	Weak transcription	Ovary	ovary
17	chr7:107146400-107183800	Weak transcription	Thymus	Thymus
18	chr7:107146400-107184000	Weak transcription	Aorta	Aorta
19	chr7:107146600-107163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:107146600-107164400	Weak transcription	Dnd41	blood
21	chr7:107146600-107169000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:107146800-107162000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:107147000-107169800	Weak transcription	Gastric	stomach
24	chr7:107147000-107178200	Weak transcription	Liver	Liver
25	chr7:107147200-107162200	Weak transcription	Primary T cells from cord blood	blood
26	chr7:107147400-107168600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:107147400-107169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:107147600-107162200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:107147600-107163400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:107147600-107163400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:107147600-107165600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:107147600-107166600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:107147600-107168600	Weak transcription	HMEC	breast
34	chr7:107147600-107169600	Weak transcription	Pancreas	Pancrea
35	chr7:107147600-107178400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr7:107147600-107183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:107147800-107156600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:107147800-107164800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:107147800-107169000	Weak transcription	HUVEC	blood vessel
40	chr7:107148200-107155200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:107148400-107166600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:107149400-107183800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:107149600-107160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:107149600-107162000	Weak transcription	Primary B cells from cord blood	blood
45	chr7:107149600-107163800	Weak transcription	Fetal Intestine Small	intestine
46	chr7:107149600-107178800	Weak transcription	Fetal Stomach	stomach
47	chr7:107149800-107158400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:107149800-107162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:107153800-107157200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr7:107153800-107183800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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