Variant report

Variant	nsv967525
Chromosome Location	chr8:54392185-54394531
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OPRK1-3	chr8:54394342-54394441	NONHSAT126591

Extended variants
information (count: 100 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1351065	chr8:54392205-54392206	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs547515552	chr8:54392276-54392277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565630317	chr8:54392317-54392318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs77618203	chr8:54392322-54392323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556594946	chr8:54392428-54392429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570173186	chr8:54392475-54392476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs561449121	chr8:54392477-54392478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552527396	chr8:54392492-54392493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs191991544	chr8:54392506-54392507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374028970	chr8:54392532-54392533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72653393	chr8:54392555-54392556	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs541314904	chr8:54392569-54392570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553496320	chr8:54392584-54392585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369000191	chr8:54392604-54392605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs144590938	chr8:54392605-54392606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78213216	chr8:54392623-54392624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550575013	chr8:54392639-54392640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531418960	chr8:54392652-54392653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs547099640	chr8:54392661-54392662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs373189239	chr8:54392669-54392670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200679876	chr8:54392676-54392677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368979288	chr8:54392678-54392679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200575339	chr8:54392691-54392692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs11315627	chr8:54392694-54392695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs527593899	chr8:54392699-54392700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs398086585	chr8:54392705-54392706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs398007837	chr8:54392706-54392707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182875072	chr8:54392725-54392726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564347406	chr8:54392733-54392734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138542885	chr8:54392782-54392783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186422234	chr8:54392800-54392801	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs560510323	chr8:54392805-54392806	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs190922859	chr8:54392811-54392812	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs569840503	chr8:54392888-54392889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs535548742	chr8:54392897-54392898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs183078467	chr8:54393022-54393023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565892545	chr8:54393023-54393024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535009135	chr8:54393028-54393029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs532546014	chr8:54393056-54393057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs16919190	chr8:54393060-54393061	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs141157703	chr8:54393096-54393097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576777535	chr8:54393161-54393162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539453520	chr8:54393162-54393163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs555884010	chr8:54393173-54393174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs576245575	chr8:54393204-54393205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs551654507	chr8:54393205-54393206	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs541907265	chr8:54393240-54393241	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs561869390	chr8:54393322-54393323	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs113644671	chr8:54393343-54393344	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs572243663	chr8:54393347-54393348	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Sezary syndrome	18413736	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Uveal melanoma	20484589	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54382800-54399400	Weak transcription	Aorta	Aorta
2	chr8:54390200-54393200	Weak transcription	Fetal Heart	heart
3	chr8:54392800-54393000	Enhancers	Right Ventricle	heart
4	chr8:54393000-54395800	Weak transcription	Right Ventricle	heart
5	chr8:54393200-54394000	Enhancers	Fetal Heart	heart
6	chr8:54393600-54394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:54393800-54394200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:54394000-54394200	Flanking Active TSS	Fetal Heart	heart
9	chr8:54394000-54394600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:54394000-54395000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:54394200-54394400	Enhancers	Fetal Heart	heart
12	chr8:54394200-54394600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:54394200-54397400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:54394400-54394600	Flanking Active TSS	Fetal Heart	heart

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