Variant report

Variant	nsv967731
Chromosome Location	chr4:20033279-20039418
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNIP4-4	chr4:20039183-20039595	NONHSAT095729

Extended variants
information (count: 255 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112041257	chr4:20033280-20033281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs531232812	chr4:20033308-20033309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541876767	chr4:20033366-20033367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149220354	chr4:20033382-20033383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs534960742	chr4:20033402-20033403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs367977847	chr4:20033403-20033404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs181224432	chr4:20033404-20033405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs143420276	chr4:20033414-20033415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529340244	chr4:20033415-20033416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs546948599	chr4:20033426-20033427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571668411	chr4:20033445-20033446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2046438	chr4:20033472-20033473	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs551292193	chr4:20033486-20033487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs185185647	chr4:20033510-20033511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371660536	chr4:20033547-20033548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555227134	chr4:20033549-20033550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs114378971	chr4:20033589-20033590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs137893530	chr4:20033602-20033603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552898081	chr4:20033647-20033648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569028064	chr4:20033668-20033669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577673158	chr4:20033669-20033670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545040263	chr4:20033679-20033680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs189706271	chr4:20033704-20033705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142419673	chr4:20033715-20033716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539722581	chr4:20033722-20033723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs144657766	chr4:20033727-20033728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561593350	chr4:20033745-20033746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79789251	chr4:20033791-20033792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540279758	chr4:20033845-20033846	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs568784288	chr4:20033854-20033855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs77004906	chr4:20033921-20033922	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs141741366	chr4:20033925-20033926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs80146055	chr4:20033926-20033927	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs150774436	chr4:20033937-20033938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs2708986	chr4:20033948-20033949	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs139175986	chr4:20033954-20033955	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs374768284	chr4:20033972-20033973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs149542310	chr4:20034028-20034029	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs183429165	chr4:20034034-20034035	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs144214980	chr4:20034047-20034048	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs369703408	chr4:20034057-20034058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs571301398	chr4:20034076-20034077	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs557075229	chr4:20034089-20034090	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs140701199	chr4:20034106-20034107	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs115279113	chr4:20034111-20034112	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs187802713	chr4:20034146-20034147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs144650263	chr4:20034169-20034170	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs28409675	chr4:20034178-20034179	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs568924899	chr4:20034200-20034201	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs577154601	chr4:20034206-20034207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	17908972	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Cancer	20164919	CNVD
Colorectal cancer	16774939	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20030400-20039000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:20032000-20033800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:20033800-20034200	Enhancers	Duodenum Mucosa	Duodenum
4	chr4:20039000-20039200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:20039200-20040000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:20039400-20039600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:20039400-20039800	Active TSS	NHDF-Ad	bronchial
8	chr4:20039400-20039800	Active TSS	NHLF	lung

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