Variant report

Variant	nsv967732
Chromosome Location	chr4:20890023-20891538
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551453059	chr4:20890032-20890033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs35009913	chr4:20890033-20890034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563310980	chr4:20890079-20890080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs139703044	chr4:20890089-20890090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs398107070	chr4:20890092-20890093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564915310	chr4:20890098-20890099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530519904	chr4:20890099-20890100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549729072	chr4:20890112-20890113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs527346627	chr4:20890206-20890207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374353777	chr4:20890214-20890215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368369299	chr4:20890227-20890228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547524354	chr4:20890259-20890260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567946647	chr4:20890277-20890278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs182126641	chr4:20890297-20890298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146116247	chr4:20890301-20890302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538052388	chr4:20890303-20890304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571766695	chr4:20890379-20890380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556728516	chr4:20890394-20890395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538766207	chr4:20890408-20890409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561421498	chr4:20890418-20890419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs56405421	chr4:20890457-20890458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs575263700	chr4:20890464-20890465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536229037	chr4:20890470-20890471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554507222	chr4:20890480-20890481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10516369	chr4:20890497-20890498	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs541271262	chr4:20890520-20890521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187060550	chr4:20890553-20890554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577755674	chr4:20890620-20890621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550390480	chr4:20890631-20890632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs545173629	chr4:20890666-20890667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs1988092	chr4:20890682-20890683	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs73242544	chr4:20890750-20890751	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs150724674	chr4:20890757-20890758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs542663327	chr4:20890852-20890853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs560912315	chr4:20890897-20890898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs528786279	chr4:20890903-20890904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547231583	chr4:20891020-20891021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190987793	chr4:20891053-20891054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552263057	chr4:20891088-20891089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs565753693	chr4:20891134-20891135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs569024794	chr4:20891153-20891154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148266181	chr4:20891161-20891162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554545599	chr4:20891170-20891171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs566816391	chr4:20891173-20891174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs534648196	chr4:20891175-20891176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553226924	chr4:20891183-20891184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs62295430	chr4:20891199-20891200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545210634	chr4:20891219-20891220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185032699	chr4:20891242-20891243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554638036	chr4:20891252-20891253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	17908972	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	22522925	CNVD
Breast cancer	22737080	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20887200-20891600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:20891400-20891800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links