Variant report

Variant	nsv967812
Chromosome Location	chr4:171525042-171526938
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:171525906-171525939	MCF-7	breast:	n/a	n/a
2	POLR2A	chr4:171525627-171525636	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLCN3-11	chr4:171526160-171526923	NONHSAT099187

Variant related genes	Relation type
HSP90AA6P	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111324246	chr4:171526166-171526167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs541769400	chr4:171526182-171526183	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs556792518	chr4:171526226-171526227	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs139501227	chr4:171526240-171526241	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs369637573	chr4:171526249-171526250	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs568522273	chr4:171526257-171526258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs545559955	chr4:171526272-171526273	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs564050542	chr4:171526280-171526281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs528221454	chr4:171526332-171526333	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs190965922	chr4:171526394-171526395	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs561765456	chr4:171526397-171526398	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs111860566	chr4:171526399-171526400	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs28658305	chr4:171526424-171526425	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs538522910	chr4:171526428-171526429	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs570319123	chr4:171526430-171526431	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs531142303	chr4:171526454-171526455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs147334224	chr4:171526468-171526469	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs570935485	chr4:171526471-171526472	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs535151518	chr4:171526504-171526505	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs553181105	chr4:171526513-171526514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs450510	chr4:171526514-171526515	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs183298491	chr4:171526558-171526559	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs556854041	chr4:171526562-171526563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs113844762	chr4:171526583-171526584	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs575168007	chr4:171526584-171526585	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs141046660	chr4:171526638-171526639	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs557968848	chr4:171526667-171526668	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs546528077	chr4:171526703-171526704	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs572946287	chr4:171526728-171526729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs435979	chr4:171526735-171526736	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs561578451	chr4:171526738-171526739	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs528902502	chr4:171526745-171526746	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs544190654	chr4:171526752-171526753	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs563993184	chr4:171526852-171526853	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs394642	chr4:171526853-171526854	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs187002436	chr4:171526854-171526855	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs571065546	chr4:171526859-171526860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs34855627	chr4:171526878-171526879	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs200345894	chr4:171526909-171526910	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs80197534	chr4:171526910-171526911	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs190985890	chr4:171526917-171526918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Neuroblastoma	16790693	CNVD
Developmental delay	22127048	CNVD
Autism	20808228	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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