Variant report

Variant	nsv967838
Chromosome Location	chr4:103818087-103818716
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CISD2-6	chr4:103817882-103819394	NONHSAT097617

Extended variants
information (count: 32 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200277907	chr4:103818098-103818099	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs189478001	chr4:103818159-103818160	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs34068865	chr4:103818164-103818165	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs551474689	chr4:103818225-103818226	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs376652025	chr4:103818229-103818230	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs375667033	chr4:103818233-103818234	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs569503423	chr4:103818234-103818235	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs537059805	chr4:103818258-103818259	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs368877923	chr4:103818262-103818263	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs550486458	chr4:103818274-103818275	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs71597133	chr4:103818301-103818302	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs199797761	chr4:103818306-103818307	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs536037291	chr4:103818320-103818321	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs200209032	chr4:103818326-103818327	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs201404402	chr4:103818352-103818353	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs199631796	chr4:103818364-103818365	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs554442480	chr4:103818494-103818495	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs572695955	chr4:103818503-103818504	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs539523227	chr4:103818507-103818508	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs558237368	chr4:103818545-103818546	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs576320252	chr4:103818557-103818558	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs4642252	chr4:103818558-103818559	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs4334755	chr4:103818574-103818575	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs4235407	chr4:103818584-103818585	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs13107424	chr4:103818585-103818586	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs540942268	chr4:103818598-103818599	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs13107991	chr4:103818604-103818605	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs185173903	chr4:103818616-103818617	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs533153997	chr4:103818643-103818644	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs13107853	chr4:103818696-103818697	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs147032604	chr4:103818697-103818698	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs13135341	chr4:103818698-103818699	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
myeloid cancer	21057493	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103791200-103834800	Weak transcription	Ovary	ovary
2	chr4:103791400-103818600	Weak transcription	HSMMtube	muscle
3	chr4:103796400-103819800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:103799200-103819400	Weak transcription	Thymus	Thymus
5	chr4:103804800-103819000	Weak transcription	K562	blood
6	chr4:103817400-103818800	Weak transcription	HepG2	liver
7	chr4:103818600-103819000	Enhancers	HSMMtube	muscle

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