Variant report

Variant	nsv968018
Chromosome Location	chr4:159033933-159038983
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:158916515..158919078-chr4:159032970..159035902,2	K562	blood:
2	chr4:159036873..159039591-chr4:159040527..159042688,2	MCF-7	breast:
3	chr4:159035966..159038109-chr4:159085768..159087308,2	MCF-7	breast:
4	chr4:159015350..159017695-chr4:159032159..159035060,3	MCF-7	breast:

Extended variants
information (count: 210 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:210 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539061211	chr4:159033976-159033977	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs140653091	chr4:159033978-159033979	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs558687221	chr4:159033992-159033993	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs575644503	chr4:159034002-159034003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs148331744	chr4:159034040-159034041	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs533145582	chr4:159034064-159034065	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs372525656	chr4:159034099-159034100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs184008259	chr4:159034117-159034118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370253491	chr4:159034135-159034136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs78290368	chr4:159034138-159034139	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs202231089	chr4:159034209-159034210	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs79770562	chr4:159034211-159034212	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs77707350	chr4:159034223-159034224	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs5863308	chr4:159034224-159034225	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs76394367	chr4:159034226-159034227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs188741786	chr4:159034229-159034230	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs546697074	chr4:159034264-159034265	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs181517298	chr4:159034283-159034284	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs549886797	chr4:159034284-159034285	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs201924734	chr4:159034309-159034310	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs5863310	chr4:159034311-159034312	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs528084537	chr4:159034314-159034315	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs544948872	chr4:159034323-159034324	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs141871106	chr4:159034347-159034348	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs530602508	chr4:159034367-159034368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs534700627	chr4:159034376-159034377	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs150641674	chr4:159034446-159034447	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs567110262	chr4:159034473-159034474	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs139676345	chr4:159034501-159034502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs546478237	chr4:159034510-159034511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs4484351	chr4:159034516-159034517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs549345618	chr4:159034538-159034539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs186220677	chr4:159034594-159034595	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs17037000	chr4:159034671-159034672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs558883994	chr4:159034775-159034776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs569173227	chr4:159034792-159034793	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs190987497	chr4:159034820-159034821	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs140951958	chr4:159034837-159034838	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs151277612	chr4:159034838-159034839	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs34037792	chr4:159034841-159034842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs5863311	chr4:159034842-159034843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs397836894	chr4:159034843-159034844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs61194189	chr4:159034877-159034878	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs375407630	chr4:159034879-159034880	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs561732222	chr4:159034880-159034881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs182315778	chr4:159034953-159034954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs80215495	chr4:159034973-159034974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs540871285	chr4:159035036-159035037	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs554416202	chr4:159035069-159035070	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs577420373	chr4:159035128-159035129	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	20409316	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Autism	20841430	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159030000-159034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:159031400-159042000	Weak transcription	Fetal Heart	heart
3	chr4:159031800-159036200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:159032600-159035600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:159032800-159035000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:159032800-159035400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:159033200-159034200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr4:159033600-159042400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:159033800-159034200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:159033800-159034200	Enhancers	HUVEC	blood vessel
11	chr4:159034000-159034800	Enhancers	Colon Smooth Muscle	Colon
12	chr4:159034000-159036000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:159034200-159036000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:159034200-159038800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:159034200-159046200	Weak transcription	HUVEC	blood vessel
16	chr4:159035000-159041200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:159035600-159035800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:159035600-159036000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:159035600-159036000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:159035600-159036000	Enhancers	Aorta	Aorta
21	chr4:159036000-159038800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:159036200-159038800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:159038800-159039000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:159038800-159039000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:159038800-159039600	Enhancers	Monocytes-CD14+_RO01746	blood

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