Variant report
Variant | nsv968037 |
---|---|
Chromosome Location | chr4:70004771-70011700 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr4:70009820-70009970 | WI-38 | lung: | n/a | n/a |
2 | JUN | chr4:70010201-70010383 | H1-hESC | embryonic stem cell: | n/a | n/a |
3 | MAFK | chr4:70006868-70007089 | HepG2 | liver: | n/a | n/a |
4 | NFYB | chr4:70008308-70008508 | GM12878 | blood: | n/a | n/a |
5 | POLR2A | chr4:70009073-70009184 | MCF10A-Er-Src | breast: | n/a | n/a |
6 | STAT3 | chr4:70007498-70007589 | MCF10A-Er-Src | breast: | n/a | n/a |
7 | STAT3 | chr4:70006547-70006596 | MCF10A-Er-Src | breast: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000251427 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs569914086 | chr4:70006551-70006552 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs538876388 | chr4:70006595-70006596 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs140099940 | chr4:70006882-70006883 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs182289993 | chr4:70006898-70006899 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs150287590 | chr4:70006929-70006930 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs561716083 | chr4:70006947-70006948 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs530471048 | chr4:70006952-70006953 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs550041236 | chr4:70006996-70006997 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs563654241 | chr4:70007007-70007008 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs376457436 | chr4:70007029-70007030 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs532539000 | chr4:70007060-70007061 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs186905268 | chr4:70007064-70007065 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs537965475 | chr4:70007498-70007499 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs566637693 | chr4:70007500-70007501 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs192681977 | chr4:70007517-70007518 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs183544799 | chr4:70007527-70007528 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs138723834 | chr4:70007549-70007550 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs575247608 | chr4:70007550-70007551 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs113336486 | chr4:70007585-70007586 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs192201700 | chr4:70008321-70008322 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs183523385 | chr4:70008339-70008340 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs186488030 | chr4:70008340-70008341 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs560354680 | chr4:70008351-70008352 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs529165021 | chr4:70008369-70008370 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs141852489 | chr4:70008392-70008393 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs1841041 | chr4:70008400-70008401 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs189747648 | chr4:70008423-70008424 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs566787670 | chr4:70008427-70008428 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs182318812 | chr4:70008461-70008462 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs536279597 | chr4:70009095-70009096 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs556061681 | chr4:70009116-70009117 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs576029983 | chr4:70009131-70009132 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs76028044 | chr4:70009146-70009147 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs116182783 | chr4:70009171-70009172 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs113015880 | chr4:70009834-70009835 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs183654379 | chr4:70009889-70009890 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs77598383 | chr4:70009894-70009895 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs74612082 | chr4:70009904-70009905 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs140798781 | chr4:70009933-70009934 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs143491871 | chr4:70009956-70009957 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs140315000 | chr4:70010204-70010205 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs374507728 | chr4:70010250-70010251 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs184563769 | chr4:70010251-70010252 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs536346399 | chr4:70010259-70010260 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs189409613 | chr4:70010260-70010261 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs576016358 | chr4:70010272-70010273 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs114860778 | chr4:70010281-70010282 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs150342954 | chr4:70010282-70010283 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs142154404 | chr4:70010361-70010362 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs201525644 | chr4:70010369-70010370 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Parkinson disease | 21956041 | CNVD |
Mental retardation | 20522426 | CNVD |
delayed speech | 20522426 | CNVD |
growth disorder | 20522426 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Parkinson disease | 18923514 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Cancer | 21183584 | CNVD |
Breast cancer | 16272173 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Breast cancer | 16608533 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Lung cancer | 19208797 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21785460 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Prostate cancer | 16573809 | CNVD |
Osteoporosis | 18992858 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Graft versus host disease | 20877625 | CNVD |
Breast cancer | 21990379 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Osteoporosis | 20877625 | CNVD |
Osteoporosis | 19737800 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 22522925 | CNVD |
Ovarian cancer | 21781307 | CNVD |