Variant report

Variant	nsv968111
Chromosome Location	chr5:107743066-107755991
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:107715395..107721337-chr5:107744476..107755519,20	MCF-7	breast:
2	chr5:107716061..107717776-chr5:107755624..107757305,2	MCF-7	breast:
3	chr5:107716406..107718614-chr5:107741116..107743935,2	MCF-7	breast:
4	chr15:65596726..65598429-chr5:107748226..107749797,2	MCF-7	breast:
5	chr5:107714638..107722268-chr5:107749146..107755039,15	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-2	chr5:107753413-107753700	NONHSAT103121
2	lnc-FER-2	chr5:107753412-107753700	NONHSAT103122
3	lnc-FER-2	chr5:107747429-107747552	NONHSAT103122
4	lnc-FER-2	chr5:107753413-107753700	XLOC_004500
5	lnc-FER-2	chr5:107747430-107747552	NONHSAT103121
6	lnc-FER-2	chr5:107747430-107747552	XLOC_004500

No data

Variant related genes	Relation type
ENSG00000200156	chromatin interactions
ENSG00000145743	chromatin interactions

Extended variants
information (count: 486 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:486 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538073384	chr5:107743067-107743068	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs373873966	chr5:107743154-107743155	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs371133762	chr5:107743161-107743162	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs187907683	chr5:107743212-107743213	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs192843576	chr5:107743243-107743244	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs145426989	chr5:107743253-107743254	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs184408806	chr5:107743262-107743263	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs563844303	chr5:107743377-107743378	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs539433183	chr5:107743392-107743393	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs187208280	chr5:107743406-107743407	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376719034	chr5:107743418-107743419	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs141406427	chr5:107743451-107743452	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs548085147	chr5:107743456-107743457	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs537479679	chr5:107743476-107743477	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs145148520	chr5:107743500-107743501	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs138972852	chr5:107743529-107743530	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs577784236	chr5:107743545-107743546	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs192669109	chr5:107743583-107743584	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs560404213	chr5:107743585-107743586	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs530443951	chr5:107743600-107743601	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs374526191	chr5:107743671-107743672	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs532415705	chr5:107743678-107743679	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs552129040	chr5:107743689-107743690	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs574151258	chr5:107743756-107743757	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs184702131	chr5:107743964-107743965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145692831	chr5:107743988-107743989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542928094	chr5:107744050-107744051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189570951	chr5:107744058-107744059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10463587	chr5:107744061-107744062	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs534704455	chr5:107744071-107744072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201998697	chr5:107744128-107744129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs148112117	chr5:107744202-107744203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547756404	chr5:107744226-107744227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs550364706	chr5:107744328-107744329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570759155	chr5:107744340-107744341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539469449	chr5:107744389-107744390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs115804137	chr5:107744402-107744403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141860063	chr5:107744403-107744404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs150610531	chr5:107744422-107744423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555399829	chr5:107744429-107744430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs139214479	chr5:107744502-107744503	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs180806988	chr5:107744537-107744538	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs184323530	chr5:107744601-107744602	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs143751472	chr5:107744603-107744604	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs536016321	chr5:107744654-107744655	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs546055385	chr5:107744666-107744667	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs147209806	chr5:107744686-107744687	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs140026431	chr5:107744763-107744764	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs35815140	chr5:107744765-107744766	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs55943910	chr5:107744766-107744767	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	21509527	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	16773561	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107735000-107745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107742000-107745200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:107742400-107745200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:107745200-107745400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:107745200-107745400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:107745200-107745600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107745200-107746000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:107745200-107746800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:107745200-107747600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:107745200-107747800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:107745400-107745800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr5:107745400-107746000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:107745400-107746000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr5:107745400-107746200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107745400-107746800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:107745400-107747600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:107745600-107746000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:107745600-107746000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr5:107745600-107746800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:107745800-107746000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:107745800-107746800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:107746000-107746800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:107746000-107747600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr5:107747400-107748600	Enhancers	HepG2	liver
25	chr5:107747600-107747800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:107747800-107750600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:107750400-107752800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:107752800-107753800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:107753600-107754000	Enhancers	Psoas Muscle	Psoas
30	chr5:107753600-107754000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr5:107753800-107754000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:107753800-107754000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:107753800-107754000	Enhancers	Brain Germinal Matrix	brain
34	chr5:107753800-107754000	Enhancers	Fetal Brain Male	brain
35	chr5:107753800-107754200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:107753800-107754200	Enhancers	Right Atrium	heart
37	chr5:107753800-107754400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:107753800-107755000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr5:107754000-107754200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:107754000-107754200	Enhancers	Gastric	stomach
41	chr5:107754000-107754800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:107754000-107755200	Weak transcription	Psoas Muscle	Psoas
43	chr5:107754200-107755200	Weak transcription	Brain Germinal Matrix	brain
44	chr5:107754200-107755600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:107754800-107755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr5:107754800-107755000	Enhancers	Fetal Brain Female	brain
47	chr5:107754800-107756200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:107754800-107757200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr5:107755000-107756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr5:107755200-107755400	Bivalent Enhancer	Fetal Brain Male	brain

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