Variant report

Variant	nsv968180
Chromosome Location	chr5:61411992-61412656
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1363784	chr5:61412013-61412014	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566726199	chr5:61412020-61412021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535796503	chr5:61412056-61412057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557516655	chr5:61412077-61412078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560613349	chr5:61412089-61412090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs555593722	chr5:61412091-61412092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs79756162	chr5:61412093-61412094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs4498216	chr5:61412148-61412149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs4235491	chr5:61412195-61412196	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs527758863	chr5:61412298-61412299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs202047828	chr5:61412301-61412302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs539808127	chr5:61412305-61412306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs190244354	chr5:61412323-61412324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573983331	chr5:61412324-61412325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555989943	chr5:61412360-61412361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562719454	chr5:61412409-61412410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs576201334	chr5:61412426-61412427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs138410673	chr5:61412439-61412440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs79791194	chr5:61412448-61412449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527790140	chr5:61412482-61412483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182064444	chr5:61412488-61412489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561307541	chr5:61412491-61412492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs377431906	chr5:61412578-61412579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Renal cell carcinoma	18194544	CNVD
abnormal development	18461090	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Neuroticism	17667963	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61410400-61415800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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