Variant report

Variant	nsv9684
Chromosome Location	chr19:22848155-22854467
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC024563.1-6	chr19:22854156-22854260	ENSG00000268981.1
2	lnc-AC024563.1-6	chr19:22848354-22848526	ENSG00000268981.1

Extended variants
information (count: 146 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:146 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147766272	chr19:22848166-22848167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs571564512	chr19:22848174-22848175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs538993602	chr19:22848212-22848213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4024172	chr19:22848225-22848226	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1994647	chr19:22848273-22848274	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs1994646	chr19:22848274-22848275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2361255	chr19:22848288-22848289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs3033318	chr19:22848296-22848297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557370876	chr19:22848301-22848302	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs58792090	chr19:22848302-22848303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374555977	chr19:22848303-22848304	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575886459	chr19:22848309-22848310	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs1994645	chr19:22848317-22848318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536496428	chr19:22848319-22848320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554723749	chr19:22848320-22848321	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192078180	chr19:22848336-22848337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs56703084	chr19:22848341-22848342	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs563169991	chr19:22848342-22848343	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs7247785	chr19:22848400-22848401	ZNF genes & repeats Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs73924904	chr19:22848438-22848439	ZNF genes & repeats Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs544950557	chr19:22848515-22848516	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs3862495	chr19:22848516-22848517	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs183423288	chr19:22848559-22848560	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201283312	chr19:22848588-22848589	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs4024173	chr19:22848591-22848592	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530821698	chr19:22848639-22848640	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549227635	chr19:22848657-22848658	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs187551849	chr19:22848680-22848681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs192761420	chr19:22848681-22848682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs73924910	chr19:22848768-22848769	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs528259802	chr19:22848769-22848770	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201704100	chr19:22848789-22848790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570704950	chr19:22848830-22848831	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs74174082	chr19:22848853-22848854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113141632	chr19:22848875-22848876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370719431	chr19:22848916-22848917	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571666791	chr19:22848922-22848923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201082027	chr19:22848923-22848924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145631122	chr19:22848974-22848975	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs373667383	chr19:22848975-22848976	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs74174083	chr19:22848977-22848978	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200733993	chr19:22848978-22848979	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201383715	chr19:22848981-22848982	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs77502029	chr19:22848984-22848985	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200522139	chr19:22848987-22848988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs74174084	chr19:22848990-22848991	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202104125	chr19:22848991-22848992	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538662546	chr19:22848993-22848994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs375629249	chr19:22849007-22849008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs74818727	chr19:22849008-22849009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22845000-22849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr19:22848200-22849200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:22848200-22849400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:22849000-22849200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:22849000-22849400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr19:22849000-22849600	ZNF genes & repeats	Dnd41	blood
7	chr19:22853600-22855200	ZNF genes & repeats	Adipose Nuclei	Adipose

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