Variant report

Variant	nsv968596
Chromosome Location	chr9:15361444-15363944
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370511562	chr9:15361458-15361459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs568299231	chr9:15361465-15361466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535774557	chr9:15361521-15361522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550859364	chr9:15361523-15361524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs34794378	chr9:15361568-15361569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182475050	chr9:15361579-15361580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs187695062	chr9:15361602-15361603	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs142829003	chr9:15361606-15361607	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs570543774	chr9:15361628-15361629	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs534406235	chr9:15361631-15361632	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs553234392	chr9:15361655-15361656	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs192709186	chr9:15361678-15361679	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs542187504	chr9:15361680-15361681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs562092	chr9:15361687-15361688	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs575399263	chr9:15361693-15361694	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs184072888	chr9:15361706-15361707	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs564287828	chr9:15361731-15361732	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs581994	chr9:15361770-15361771	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs188905943	chr9:15361787-15361788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs192178868	chr9:15361809-15361810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs146981724	chr9:15361833-15361834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs184414640	chr9:15361848-15361849	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs529436359	chr9:15361855-15361856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs544269079	chr9:15361859-15361860	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs6474906	chr9:15361860-15361861	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs533426178	chr9:15361904-15361905	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs552186370	chr9:15361928-15361929	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs570332636	chr9:15361946-15361947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs143361987	chr9:15361950-15361951	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558879184	chr9:15361999-15362000	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs188727250	chr9:15362043-15362044	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs1942476	chr9:15362057-15362058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs568119435	chr9:15362112-15362113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs535646889	chr9:15362117-15362118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs367667053	chr9:15362204-15362205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs2849051	chr9:15362208-15362209	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs545761991	chr9:15362216-15362217	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs78889108	chr9:15362228-15362229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs369385863	chr9:15362230-15362231	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs76070048	chr9:15362231-15362232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs76360516	chr9:15362243-15362244	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs77162562	chr9:15362244-15362245	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs75580729	chr9:15362245-15362246	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs558159543	chr9:15362266-15362267	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs191886830	chr9:15362285-15362286	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs540367993	chr9:15362292-15362293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs201003544	chr9:15362298-15362299	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs532160390	chr9:15362360-15362361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10961984	chr9:15362361-15362362	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs79552639	chr9:15362405-15362406	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15356200-15362800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:15357600-15361600	Weak transcription	HepG2	liver
3	chr9:15361600-15362600	Enhancers	HepG2	liver

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