Variant report

Variant	nsv968803
Chromosome Location	chr5:2158447-2158947
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:57920977..57923515-chr5:2156185..2159175,2	MCF-7	breast:
2	chr5:2157501..2159114-chr5:2160612..2162756,2	K562	blood:
3	chr5:2158940..2162569-chr5:2167840..2169762,3	K562	blood:
4	chr5:2151523..2154328-chr5:2155802..2158524,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs59027563	chr5:2158459-2158460	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs548683742	chr5:2158503-2158504	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372877282	chr5:2158504-2158505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs115888674	chr5:2158513-2158514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs58838588	chr5:2158524-2158525	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs142830238	chr5:2158526-2158527	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188788560	chr5:2158549-2158550	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs11133930	chr5:2158553-2158554	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs561276601	chr5:2158581-2158582	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11744359	chr5:2158582-2158583	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531906449	chr5:2158594-2158595	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs191705814	chr5:2158609-2158610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs571166433	chr5:2158615-2158616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538681597	chr5:2158626-2158627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs184791174	chr5:2158671-2158672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs189225267	chr5:2158672-2158673	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs151042123	chr5:2158684-2158685	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs112012841	chr5:2158697-2158698	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs554880614	chr5:2158703-2158704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576375425	chr5:2158704-2158705	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs537356790	chr5:2158710-2158711	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs4866655	chr5:2158719-2158720	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs181021336	chr5:2158762-2158763	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs376598195	chr5:2158771-2158772	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs369535829	chr5:2158778-2158779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs35994518	chr5:2158784-2158785	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs66999227	chr5:2158785-2158786	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs185860265	chr5:2158878-2158879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs140964334	chr5:2158929-2158930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs561163931	chr5:2158940-2158941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16608533	CNVD
Cervical cancer	16585170	CNVD
Glioblastoma multiforme	22286061	CNVD
Lung cancer	17925434	CNVD
Ovarian cancer	20844748	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	21829676	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	19181860	CNVD
prenatal diagnosis	20453657	CNVD
Developmental delay	19490664	CNVD
Human papillomavirus	17975027	CNVD
Acute monocytic leukemia	16498392	CNVD
Gastric cancer	16891809	CNVD
Intracranial aneurysm	16715129	CNVD
Emphysema	19352772	CNVD
Chordoma	18071362	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung cancer	21911935	CNVD
Cri-du chat syndrome	21549014	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
abnormal development	18461090	CNVD
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Urothelial carcinoma	21177765	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	17550852	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Developmental delay	21147756	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	21364760	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2150200-2160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:2156400-2159200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:2156400-2159200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:2157600-2158600	Enhancers	Esophagus	oesophagus
5	chr5:2158000-2171000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:2158200-2159000	Enhancers	NHEK	skin

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