Variant report

Variant	nsv968826
Chromosome Location	chr5:42040753-42046427
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42037141..42039596-chr5:42040271..42043042,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567932157	chr5:42040791-42040792	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs528492175	chr5:42040862-42040863	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181601177	chr5:42040920-42040921	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571412289	chr5:42040938-42040939	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538708708	chr5:42040972-42040973	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs141157359	chr5:42040985-42040986	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568760066	chr5:42040996-42040997	Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs536427397	chr5:42041062-42041063	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs143586990	chr5:42041089-42041090	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs554315521	chr5:42041168-42041169	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs573061078	chr5:42041205-42041206	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs533553684	chr5:42041219-42041220	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs186561121	chr5:42041249-42041250	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546047513	chr5:42041294-42041295	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs576897361	chr5:42041362-42041363	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs146795563	chr5:42041368-42041369	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527523115	chr5:42041398-42041399	Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs78494732	chr5:42041416-42041417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs562546945	chr5:42041430-42041431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs190282798	chr5:42041462-42041463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs543172414	chr5:42041477-42041478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs79060991	chr5:42041479-42041480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181973452	chr5:42041515-42041516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs276306	chr5:42041524-42041525	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs186360163	chr5:42041550-42041551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs564980804	chr5:42041577-42041578	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Hepatocellular carcinoma	18929564	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42038200-42041000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:42040000-42041400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:42041000-42041600	Enhancers	HUES64 Cell Line	embryonic stem cell

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