Variant report

Variant	nsv969313
Chromosome Location	chr6:86659779-86673615
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:86657984..86660030-chr6:86660418..86662554,2	MCF-7	breast:
2	chr6:86657984..86660030-chr6:86660418..86662554,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188870708	chr6:86668420-86668421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs556387821	chr6:86668423-86668424	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs377638749	chr6:86668424-86668425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs142653187	chr6:86668475-86668476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs146896961	chr6:86668476-86668477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs192541449	chr6:86668485-86668486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs182620980	chr6:86668501-86668502	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs561316819	chr6:86668510-86668511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs576648358	chr6:86668552-86668553	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs145855519	chr6:86668557-86668558	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs545196743	chr6:86668560-86668561	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs565642649	chr6:86668562-86668563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs186975459	chr6:86668570-86668571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs533128721	chr6:86668571-86668572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs72911364	chr6:86668584-86668585	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs143757727	chr6:86668595-86668596	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs370284640	chr6:86668609-86668610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs115874113	chr6:86668637-86668638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs12213149	chr6:86668644-86668645	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs561198499	chr6:86668664-86668665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs117962395	chr6:86668686-86668687	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs191870968	chr6:86668695-86668696	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs148125271	chr6:86668708-86668709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs571522115	chr6:86668725-86668726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs538820100	chr6:86668727-86668728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs184267161	chr6:86668738-86668739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs2786854	chr6:86668740-86668741	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs558944612	chr6:86668767-86668768	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs528175460	chr6:86668777-86668778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs551228800	chr6:86668779-86668780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs536939821	chr6:86668798-86668799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86668400-86668800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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