Variant report

Variant	nsv969362
Chromosome Location	chr6:26798043-26814715
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 413 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:413 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542024263	chr6:26798104-26798105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs201474060	chr6:26798167-26798168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527909154	chr6:26798172-26798173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547472469	chr6:26798204-26798205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs570653792	chr6:26798257-26798258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs2504524	chr6:26798264-26798265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368613406	chr6:26798309-26798310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2498348	chr6:26798312-26798313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538162442	chr6:26798326-26798327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs376946015	chr6:26798332-26798333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554928799	chr6:26798335-26798336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs368795817	chr6:26798344-26798345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs568245038	chr6:26798372-26798373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs534018416	chr6:26798379-26798380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542918294	chr6:26798416-26798417	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs367693101	chr6:26798423-26798424	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs563206311	chr6:26798431-26798432	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs553901438	chr6:26798464-26798465	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs577015588	chr6:26798493-26798494	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs35303717	chr6:26798499-26798500	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs373010789	chr6:26798503-26798504	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371436725	chr6:26798504-26798505	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs180953697	chr6:26798515-26798516	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs556140597	chr6:26798530-26798531	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs2504527	chr6:26798531-26798532	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs575909381	chr6:26798532-26798533	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs543396433	chr6:26798537-26798538	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs576635111	chr6:26798560-26798561	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs542488388	chr6:26798564-26798565	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs377179250	chr6:26798566-26798567	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs562080073	chr6:26798568-26798569	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs9467917	chr6:26798605-26798606	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs141789101	chr6:26798607-26798608	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2932648	chr6:26798624-26798625	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs143471787	chr6:26798635-26798636	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs114139868	chr6:26798640-26798641	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs533480237	chr6:26798655-26798656	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549876816	chr6:26798659-26798660	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs563675620	chr6:26798664-26798665	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529303079	chr6:26798671-26798672	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs62396087	chr6:26798688-26798689	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62396088	chr6:26798697-26798698	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs548492703	chr6:26798699-26798700	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62396089	chr6:26798706-26798707	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs2636434	chr6:26798724-26798725	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs568411105	chr6:26798729-26798730	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs2636433	chr6:26798734-26798735	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs6914556	chr6:26798749-26798750	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112147304	chr6:26798762-26798763	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547622705	chr6:26798765-26798766	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26796800-26798400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:26796800-26798400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:26796800-26798400	Weak transcription	Aorta	Aorta
4	chr6:26796800-26798400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:26797000-26798400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:26797000-26798600	Weak transcription	Liver	Liver
7	chr6:26797200-26798800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:26797600-26807600	Weak transcription	Ovary	ovary
9	chr6:26797800-26800000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:26797800-26800200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:26797800-26800200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:26798000-26800400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:26798400-26799000	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:26798400-26799000	Weak transcription	HSMMtube	muscle
15	chr6:26798400-26799200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:26798400-26799200	Strong transcription	Aorta	Aorta
17	chr6:26798400-26799200	ZNF genes & repeats	Pancreas	Pancrea
18	chr6:26798400-26799200	Strong transcription	Stomach Smooth Muscle	stomach
19	chr6:26798400-26799400	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr6:26798400-26799400	ZNF genes & repeats	Fetal Heart	heart
21	chr6:26798400-26799400	ZNF genes & repeats	Fetal Kidney	kidney
22	chr6:26798600-26798800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:26798600-26799200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:26798600-26799200	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr6:26798600-26799200	Strong transcription	Liver	Liver
26	chr6:26798600-26799200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
27	chr6:26798600-26799200	ZNF genes & repeats	Dnd41	blood
28	chr6:26798600-26799400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:26798600-26799400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr6:26798600-26799400	ZNF genes & repeats	Fetal Brain Male	brain
31	chr6:26798600-26799400	ZNF genes & repeats	Fetal Lung	lung
32	chr6:26798600-26799400	ZNF genes & repeats	Gastric	stomach
33	chr6:26798800-26799000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr6:26798800-26799200	ZNF genes & repeats	Brain Angular Gyrus	brain
35	chr6:26798800-26799200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr6:26798800-26799200	ZNF genes & repeats	K562	blood
37	chr6:26798800-26799400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:26798800-26799400	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr6:26798800-26799400	Strong transcription	Brain Anterior Caudate	brain
40	chr6:26798800-26799400	ZNF genes & repeats	Esophagus	oesophagus
41	chr6:26799000-26799200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
42	chr6:26799000-26799200	ZNF genes & repeats	HSMMtube	muscle
43	chr6:26799000-26799800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:26799200-26799600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:26799200-26800800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:26799200-26800800	Weak transcription	Liver	Liver
47	chr6:26799200-26800800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:26799200-26801000	Weak transcription	Aorta	Aorta
49	chr6:26799400-26801000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:26799400-26801000	Weak transcription	Brain Anterior Caudate	brain

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