Variant report

Variant	nsv969404
Chromosome Location	chr6:57301274-57383601
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:57364923-57365929	HepG2	liver:	n/a	n/a
2	ATF1	chr6:57329848-57330048	K562	blood:	n/a	n/a
3	BACH1	chr6:57363671-57363854	K562	blood:	n/a	n/a
4	BACH1	chr6:57364094-57364109	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr6:57305657-57305828	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr6:57365814-57365865	K562	blood:	n/a	n/a
7	BACH1	chr6:57350106-57350125	K562	blood:	n/a	n/a
8	BACH1	chr6:57337567-57337643	K562	blood:	n/a	n/a
9	BACH1	chr6:57334050-57334159	H1-hESC	embryonic stem cell:	n/a	n/a
10	BHLHE40	chr6:57375272-57375472	GM12878	blood:	n/a	n/a
11	BRCA1	chr6:57382748-57382761	HepG2	liver:	n/a	n/a
12	BRCA1	chr6:57370484-57370781	GM12878	blood:	n/a	n/a
13	BRCA1	chr6:57381413-57381830	Hela-S3	cervix:	n/a	n/a
14	CCNT2	chr6:57376252-57377005	K562	blood:	n/a	n/a
15	CCNT2	chr6:57337935-57338250	K562	blood:	n/a	n/a
16	CCNT2	chr6:57354598-57355019	K562	blood:	n/a	n/a
17	CEBPB	chr6:57345045-57345323	A549	lung:	n/a	n/a
18	CEBPB	chr6:57380170-57380548	MCF-7	breast:	n/a	chr6:57380307-57380318
19	CEBPB	chr6:57342559-57342815	K562	blood:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
20	CEBPB	chr6:57351453-57351791	A549	lung:	n/a	n/a
21	CEBPB	chr6:57380198-57380376	HepG2	liver:	n/a	chr6:57380307-57380318
22	CEBPB	chr6:57345012-57345358	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:57342573-57342758	K562	blood:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
24	CEBPB	chr6:57342547-57342915	HepG2	liver:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
25	CEBPB	chr6:57372189-57372470	H1-hESC	embryonic stem cell:	n/a	n/a
26	CEBPB	chr6:57380136-57380500	HepG2	liver:	n/a	chr6:57380307-57380318
27	CEBPB	chr6:57309423-57309721	HepG2	liver:	n/a	chr6:57309567-57309578 chr6:57309569-57309580 chr6:57309567-57309580
28	CEBPB	chr6:57339745-57340267	HepG2	liver:	n/a	chr6:57340072-57340083
29	CEBPB	chr6:57342520-57342924	MCF-7	breast:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
30	CEBPB	chr6:57342549-57342911	A549	lung:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
31	CEBPB	chr6:57340502-57340798	A549	lung:	n/a	chr6:57340669-57340680
32	CEBPB	chr6:57370190-57370638	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr6:57363905-57364223	HepG2	liver:	n/a	n/a
34	CEBPB	chr6:57342550-57342902	Hela-S3	cervix:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
35	CEBPB	chr6:57380175-57380499	A549	lung:	n/a	chr6:57380307-57380318
36	CEBPB	chr6:57342545-57342898	A549	lung:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
37	CEBPB	chr6:57345014-57345344	IMR90	lung:	n/a	n/a
38	CEBPB	chr6:57351451-57351812	HepG2	liver:	n/a	n/a
39	CEBPB	chr6:57339225-57340861	IMR90	lung:	n/a	chr6:57340669-57340680 chr6:57340072-57340083
40	CEBPB	chr6:57339218-57339525	HepG2	liver:	n/a	n/a
41	CEBPB	chr6:57365064-57365775	HepG2	liver:	n/a	n/a
42	CEBPB	chr6:57339741-57340235	A549	lung:	n/a	chr6:57340072-57340083
43	CEBPB	chr6:57309469-57309669	IMR90	lung:	n/a	chr6:57309567-57309578 chr6:57309569-57309580 chr6:57309567-57309580
44	CEBPB	chr6:57380157-57380496	IMR90	lung:	n/a	chr6:57380307-57380318
45	CEBPB	chr6:57351364-57351927	IMR90	lung:	n/a	n/a
46	CEBPB	chr6:57340499-57340835	HepG2	liver:	n/a	chr6:57340669-57340680
47	CEBPB	chr6:57380149-57380488	K562	blood:	n/a	chr6:57380307-57380318
48	CEBPB	chr6:57342505-57343002	A549	lung:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741
49	CEBPB	chr6:57380150-57380500	Hela-S3	cervix:	n/a	chr6:57380307-57380318
50	CEBPB	chr6:57342549-57342911	H1-hESC	embryonic stem cell:	n/a	chr6:57342732-57342743 chr6:57342730-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741 chr6:57342730-57342743 chr6:57342732-57342741

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:57306409-57306459	PANC-1	pancreas:	n/a
2	chr6:57359134-57359184	H1-hESC	embryonic stem cell:	embryo
3	chr6:57306409-57306459	NHDF-neo	bronchial:	n/a
4	chr6:57305889-57305939	SK-N-SH	brain:	n/a
5	chr6:57350270-57350320	T-47D	breast:	n/a
6	chr6:57350270-57350320	PrEC	prostate:	n/a
7	chr6:57306409-57306459	PrEC	prostate:	n/a
8	chr6:57350270-57350320	MCF-7	breast:	n/a
9	chr6:57350270-57350320	BJ	skin:	n/a
10	chr6:57339858-57339908	RPTEC	kidney:	n/a
11	chr6:57350270-57350320	HCF	heart:	n/a
12	chr6:57305889-57305939	Caco-2	colon:	n/a
13	chr6:57335405-57335455	SAEC	small airway:	n/a
14	chr6:57335405-57335455	SK-N-MC	brain:	n/a
15	chr6:57350270-57350320	GM12892	blood:	n/a
16	chr6:57305889-57305939	HUVEC	blood vessel:	n/a
17	chr6:57305889-57305939	IMR90	lung:	fetal
18	chr6:57350270-57350320	NH-A	brain:	n/a
19	chr6:57350270-57350320	ECC-1	luminal epithelium:	n/a
20	chr6:57339858-57339908	HMEC	breast:	n/a
21	chr6:57359134-57359184	HRCEpiC	kidney:	n/a
22	chr6:57350270-57350320	AG09309	skin:	n/a
23	chr6:57350270-57350320	NHDF-neo	bronchial:	n/a
24	chr6:57306409-57306459	SK-N-SH	brain:	n/a
25	chr6:57350270-57350320	HAEpiC	amniotic membrane:	n/a
26	chr6:57350270-57350320	GM12891	blood:	n/a
27	chr6:57359134-57359184	K562	blood:	n/a
28	chr6:57306409-57306459	BE2_C	brain:	n/a
29	chr6:57305889-57305939	SAEC	small airway:	n/a
30	chr6:57350270-57350320	HL-60	blood:	n/a
31	chr6:57335405-57335455	H1-hESC	embryonic stem cell:	embryo
32	chr6:57350270-57350320	AG04449	skin:	fetal
33	chr6:57339858-57339908	HRE	kidney:	n/a
34	chr6:57339858-57339908	GM12891	blood:	n/a
35	chr6:57305889-57305939	SK-N-SH_RA	brain:	n/a
36	chr6:57339858-57339908	NHDF-neo	bronchial:	n/a
37	chr6:57339858-57339908	PFSK-1	brain:	n/a
38	chr6:57359134-57359184	PANC-1	pancreas:	n/a
39	chr6:57305889-57305939	HCPEpiC	choroid plexus:	n/a
40	chr6:57306409-57306459	Hela-S3	cervix:	n/a
41	chr6:57306409-57306459	NH-A	brain:	n/a
42	chr6:57306409-57306459	PFSK-1	brain:	n/a
43	chr6:57339858-57339908	HIPEpiC	eye:	n/a
44	chr6:57305889-57305939	NHBE	bronchial:	n/a
45	chr6:57339858-57339908	SK-N-SH	brain:	n/a
46	chr6:57359134-57359184	BJ	skin:	n/a
47	chr6:57306409-57306459	RPTEC	kidney:	n/a
48	chr6:57359134-57359184	Hepatocyte	liver:	n/a
49	chr6:57359134-57359184	HMEC	breast:	n/a
50	chr6:57335405-57335455	HMEC	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:57346719..57348670-chr6:57349128..57351994,2	MCF-7	breast:
2	chr6:57344628..57347602-chr6:57348060..57349813,2	K562	blood:
3	chr6:57371365..57373576-chr6:57373848..57375922,2	K562	blood:
4	chr6:57344628..57347602-chr6:57348060..57349813,2	K562	blood:
5	chr6:57361390..57363831-chr6:57368584..57370615,2	MCF-7	breast:
6	chr6:57370604..57372865-chr6:57373848..57376238,2	K562	blood:
7	chr6:57232895..57235001-chr6:57373838..57375777,2	K562	blood:
8	chr6:57302195..57303819-chr6:57305158..57307849,2	MCF-7	breast:
9	chr6:57380965..57383908-chr6:57390419..57392004,2	K562	blood:
10	chr6:57302195..57303819-chr6:57305158..57307849,2	MCF-7	breast:
11	chr6:57287892..57290689-chr6:57302857..57304913,2	K562	blood:
12	chr6:57297690..57300107-chr6:57303137..57305465,2	MCF-7	breast:
13	chr6:57337415..57340116-chr6:57349926..57352459,2	K562	blood:
14	chr6:57370604..57372865-chr6:57373848..57376238,2	K562	blood:
15	chr6:57358740..57361214-chr6:57362213..57364300,2	K562	blood:
16	chr6:57371365..57373576-chr6:57373848..57375922,2	K562	blood:
17	chr6:57358740..57361214-chr6:57362213..57364300,2	K562	blood:
18	chr6:57368098..57370585-chr6:57379961..57384432,3	K562	blood:
19	chr6:57297598..57300578-chr6:57301764..57305557,4	K562	blood:
20	chr6:57296504..57298287-chr6:57300033..57301535,2	K562	blood:
21	chr6:57349293..57351634-chr6:57356907..57359151,3	MCF-7	breast:
22	chr6:57346719..57348670-chr6:57349128..57351994,2	MCF-7	breast:
23	chr6:57337415..57340116-chr6:57349926..57352459,2	K562	blood:
24	chr6:57293162..57295571-chr6:57300739..57302981,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAG2-1	chr6:57362331-57362565	ENSG00000266579.1
2	lnc-BAG2-1	chr6:57358736-57358845	ENSG00000266579.1

Variant related genes	Relation type
PRIM2	TF binding region
ENSG00000266579	TF binding region
PRIM2	CpG island
ENSG00000266579	CpG island
ENSG00000146143	chromatin interactions
ENSG00000266579	chromatin interactions

Extended variants
information (count: 5038 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:5038 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115697379	chr6:57301300-57301301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7751464	chr6:57301314-57301315	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs143661683	chr6:57301339-57301340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377514267	chr6:57301341-57301342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371894743	chr6:57301347-57301348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs9464485	chr6:57301365-57301366	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs185877630	chr6:57301401-57301402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs376783251	chr6:57301450-57301451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs62401709	chr6:57301501-57301502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112362920	chr6:57301524-57301525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs144097529	chr6:57301534-57301535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2894855	chr6:57301584-57301585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144750429	chr6:57301626-57301627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373039135	chr6:57301627-57301628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs5010465	chr6:57301628-57301629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148687522	chr6:57301648-57301649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs543824199	chr6:57301649-57301650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs4593355	chr6:57301659-57301660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9382736	chr6:57301661-57301662	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs4476821	chr6:57301669-57301670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12215045	chr6:57301682-57301683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2397292	chr6:57301714-57301715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577877805	chr6:57301739-57301740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545015623	chr6:57301771-57301772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs560292180	chr6:57301772-57301773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527522592	chr6:57301789-57301790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112605579	chr6:57301790-57301791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534039159	chr6:57301818-57301819	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs2397293	chr6:57301860-57301861	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs561384948	chr6:57301889-57301890	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs531711462	chr6:57301894-57301895	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs2397294	chr6:57301943-57301944	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs34241526	chr6:57301956-57301957	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs201790635	chr6:57301957-57301958	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs58260736	chr6:57301959-57301960	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs2397295	chr6:57301960-57301961	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs2397296	chr6:57301962-57301963	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs2397297	chr6:57301963-57301964	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs372671612	chr6:57302007-57302008	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs571810167	chr6:57302008-57302009	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs9464486	chr6:57302027-57302028	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs5010464	chr6:57302048-57302049	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs532834760	chr6:57302064-57302065	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs386701526	chr6:57302076-57302077	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs5010462	chr6:57302077-57302078	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs547801019	chr6:57302083-57302084	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs566245671	chr6:57302106-57302107	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs536462887	chr6:57302107-57302108	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs9464490	chr6:57302126-57302127	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs62401710	chr6:57302131-57302132	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Intellectual disability	21811512	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:943 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57284400-57303600	Weak transcription	Pancreas	Pancrea
2	chr6:57286600-57310200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:57288800-57303400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:57289000-57310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:57289400-57305400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:57291600-57305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:57292400-57301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:57294200-57301800	Weak transcription	Aorta	Aorta
9	chr6:57294400-57301800	Weak transcription	Left Ventricle	heart
10	chr6:57296600-57301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:57296800-57301600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:57297000-57305800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:57297800-57301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:57297800-57302400	Weak transcription	HMEC	breast
15	chr6:57298000-57302000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:57298000-57302600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:57298000-57305000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:57298000-57305200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:57298000-57309800	Weak transcription	Dnd41	blood
20	chr6:57298400-57305600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:57298600-57301600	Weak transcription	HUVEC	blood vessel
22	chr6:57298600-57305200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:57298600-57307000	Weak transcription	HSMM	muscle
24	chr6:57298600-57310800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:57298800-57301600	Weak transcription	GM12878-XiMat	blood
26	chr6:57298800-57301800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:57299200-57307000	Weak transcription	Osteobl	bone
28	chr6:57299400-57306200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:57300400-57301800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:57300400-57302000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:57300400-57305400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:57300600-57301600	Weak transcription	Primary T cells from cord blood	blood
33	chr6:57300600-57301800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:57300800-57301800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:57300800-57305800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:57301200-57306000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:57301800-57302000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:57301800-57302000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr6:57301800-57302000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:57301800-57302000	ZNF genes & repeats	Aorta	Aorta
41	chr6:57301800-57302000	Enhancers	Left Ventricle	heart
42	chr6:57301800-57302200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:57301800-57302200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:57301800-57302400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:57301800-57302400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:57302000-57302200	Enhancers	H9 Cell Line	embryonic stem cell
47	chr6:57302000-57302200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:57302000-57302200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:57302000-57302600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:57302000-57307200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links