Variant report

Variant	nsv969414
Chromosome Location	chr6:62070937-62128589
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369002804	chr6:62074007-62074008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs563621198	chr6:62074009-62074010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs530669221	chr6:62074013-62074014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs550562386	chr6:62074029-62074030	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs552411401	chr6:62074032-62074033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs374146136	chr6:62074035-62074036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs2341164	chr6:62074046-62074047	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs141778576	chr6:62074062-62074063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs147086701	chr6:62074063-62074064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs532846115	chr6:62074076-62074077	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs372619024	chr6:62074095-62074096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs556657326	chr6:62074101-62074102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs569541613	chr6:62074102-62074103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs539781259	chr6:62074125-62074126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs558023807	chr6:62074143-62074144	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs573127108	chr6:62074145-62074146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs566548702	chr6:62074146-62074147	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182009492	chr6:62074148-62074149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs555845688	chr6:62074159-62074160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs574021203	chr6:62074160-62074161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs544595393	chr6:62074162-62074163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs562700769	chr6:62074200-62074201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs371505819	chr6:62074206-62074207	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs533353528	chr6:62074216-62074217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs546166129	chr6:62074220-62074221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs113655321	chr6:62074255-62074256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs536074385	chr6:62074256-62074257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs528331649	chr6:62074266-62074267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs546784910	chr6:62074276-62074277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs185851138	chr6:62074289-62074290	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs528937383	chr6:62074297-62074298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs190510016	chr6:62074298-62074299	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs374192574	chr6:62074343-62074344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs138349344	chr6:62074358-62074359	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs539021873	chr6:62074364-62074365	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs181132286	chr6:62074377-62074378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs149629822	chr6:62074378-62074379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs534145186	chr6:62074385-62074386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs538108780	chr6:62074386-62074387	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs574087061	chr6:62074396-62074397	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs145383076	chr6:62088013-62088014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs199751215	chr6:62088017-62088018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs531744411	chr6:62088022-62088023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200659335	chr6:62088030-62088031	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543875069	chr6:62088059-62088060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs565178466	chr6:62088066-62088067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs532334245	chr6:62088076-62088077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs551552792	chr6:62088115-62088116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs569872900	chr6:62088136-62088137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs551268563	chr6:62088146-62088147	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Tetralogy of Fallot	22912587	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62074000-62074400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:62088000-62088800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:62088200-62088600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:62103400-62103600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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