Variant report

Variant	nsv969416
Chromosome Location	chr6:66192471-66202554
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LGSN-7	chr6:66199254-66200600	NONHSAT113373

Extended variants
information (count: 64 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538684418	chr6:66199262-66199263	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs184788223	chr6:66199263-66199264	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs145582077	chr6:66199270-66199271	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs189110711	chr6:66199291-66199292	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs534334684	chr6:66199312-66199313	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs151058987	chr6:66199341-66199342	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs543913468	chr6:66199417-66199418	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs563507318	chr6:66199418-66199419	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs141011797	chr6:66199481-66199482	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs150192143	chr6:66199482-66199483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs560078482	chr6:66199501-66199502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs528841102	chr6:66199507-66199508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs548776326	chr6:66199509-66199510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs545455774	chr6:66199549-66199550	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs564057497	chr6:66199567-66199568	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs535930312	chr6:66199576-66199577	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs145678546	chr6:66199624-66199625	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs569501219	chr6:66199629-66199630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs80158983	chr6:66199639-66199640	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs193133974	chr6:66199683-66199684	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs543217875	chr6:66199686-66199687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs561596499	chr6:66199690-66199691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs571990336	chr6:66199713-66199714	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs75181837	chr6:66199735-66199736	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs76091448	chr6:66199746-66199747	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs145525129	chr6:66199765-66199766	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs55835014	chr6:66199813-66199814	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs184366766	chr6:66199820-66199821	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs189360328	chr6:66199849-66199850	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs181056224	chr6:66199859-66199860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs557437999	chr6:66199880-66199881	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs577308684	chr6:66199882-66199883	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs372144319	chr6:66199925-66199926	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs9354255	chr6:66199926-66199927	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs183998544	chr6:66199970-66199971	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs370555593	chr6:66199981-66199982	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs551763684	chr6:66200042-66200043	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs536158580	chr6:66200055-66200056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs188835078	chr6:66200057-66200058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs562235162	chr6:66200078-66200079	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs4710521	chr6:66200096-66200097	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs549567831	chr6:66200114-66200115	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs569732548	chr6:66200122-66200123	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs532139353	chr6:66200172-66200173	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs551741585	chr6:66200185-66200186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs181594934	chr6:66200215-66200216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs534577534	chr6:66200257-66200258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs138147445	chr6:66200275-66200276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs568122107	chr6:66200309-66200310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs537241507	chr6:66200367-66200368	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Retinitis pigmentosa	21519034	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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