Variant report

Variant	nsv969439
Chromosome Location	chr6:118900716-118913670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:360)
CpG islands
(count:183)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:360 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:118902902-118903335	K562	blood:	n/a	n/a
2	ATF1	chr6:118902847-118903468	K562	blood:	n/a	n/a
3	ATF3	chr6:118902749-118903214	K562	blood:	n/a	n/a
4	BHLHE40	chr6:118902939-118903073	K562	blood:	n/a	n/a
5	CBX3	chr6:118901994-118902392	K562	blood:	n/a	n/a
6	CCNT2	chr6:118902978-118903278	K562	blood:	n/a	n/a
7	CEBPB	chr6:118902739-118903397	K562	blood:	n/a	chr6:118902993-118903004
8	CEBPB	chr6:118901635-118902067	A549	lung:	n/a	n/a
9	CEBPB	chr6:118902774-118903237	MCF-7	breast:	n/a	chr6:118902993-118903004
10	CEBPB	chr6:118902795-118903585	Hela-S3	cervix:	n/a	chr6:118902993-118903004
11	CEBPB	chr6:118902829-118903172	HepG2	liver:	n/a	chr6:118902993-118903004
12	CEBPB	chr6:118901543-118902056	A549	lung:	n/a	n/a
13	CEBPB	chr6:118902771-118903251	MCF-7	breast:	n/a	chr6:118902993-118903004
14	CEBPB	chr6:118901475-118902234	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr6:118901621-118902335	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr6:118901631-118902204	K562	blood:	n/a	n/a
17	CEBPB	chr6:118902800-118903404	IMR90	lung:	n/a	chr6:118902993-118903004
18	CEBPB	chr6:118902816-118903220	K562	blood:	n/a	chr6:118902993-118903004
19	CEBPB	chr6:118902811-118903240	HCT-116	colon:	n/a	chr6:118902993-118903004
20	CEBPB	chr6:118902829-118903136	A549	lung:	n/a	chr6:118902993-118903004
21	CEBPB	chr6:118902708-118903434	K562	blood:	n/a	chr6:118902993-118903004
22	CEBPB	chr6:118901615-118901988	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:118902924-118903120	A549	lung:	n/a	chr6:118902993-118903004
24	CEBPB	chr6:118901629-118901915	A549	lung:	n/a	n/a
25	CEBPB	chr6:118902772-118903243	A549	lung:	n/a	chr6:118902993-118903004
26	CEBPB	chr6:118901597-118902257	IMR90	lung:	n/a	n/a
27	CEBPB	chr6:118901590-118902036	MCF-7	breast:	n/a	n/a
28	CEBPD	chr6:118902812-118903248	K562	blood:	n/a	n/a
29	CEBPD	chr6:118902754-118903283	K562	blood:	n/a	n/a
30	CHD2	chr6:118902863-118903155	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr6:118902700-118902850	BJ	skin:	n/a	n/a
32	CTCF	chr6:118902120-118902270	AoAF	blood vessel:	n/a	n/a
33	CTCF	chr6:118902066-118902226	A549	lung:	n/a	n/a
34	CTCF	chr6:118902800-118902950	RPTEC	kidney:	n/a	n/a
35	CTCF	chr6:118902047-118902253	Fibrobl	skin:	n/a	n/a
36	CTCF	chr6:118902120-118902270	WI-38	lung:	n/a	n/a
37	CTCF	chr6:118902100-118902250	GM12870	blood:	n/a	n/a
38	CTCF	chr6:118902680-118902830	BJ	skin:	n/a	n/a
39	CTCF	chr6:118902053-118902212	GM19240	blood:	n/a	n/a
40	CTCF	chr6:118901720-118901870	HEEpiC	esophagus:	n/a	n/a
41	CTCF	chr6:118901760-118901910	HFF-Myc	foreskin:	n/a	n/a
42	CTCF	chr6:118902040-118902190	GM12875	blood:	n/a	n/a
43	CTCF	chr6:118902120-118902270	GM12869	blood:	n/a	n/a
44	CTCF	chr6:118902100-118902250	HCPEpiC	choroid plexus:	n/a	n/a
45	CTCF	chr6:118902200-118902350	HFF	foreskin:	n/a	n/a
46	CTCF	chr6:118902140-118902290	HEEpiC	esophagus:	n/a	n/a
47	CTCF	chr6:118902120-118902270	NB4	blood:	n/a	n/a
48	CTCF	chr6:118902060-118902210	NHDF-neo	bronchial:	n/a	n/a
49	CTCF	chr6:118902080-118902230	AG09319	gingival:	n/a	n/a
50	CTCF	chr6:118902120-118902270	GM12867	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:118903047-118903097	SK-N-SH_RA	brain:	n/a
2	chr6:118909918-118909968	ECC-1	luminal epithelium:	n/a
3	chr6:118903047-118903097	ProgFib	skin:	n/a
4	chr6:118903047-118903097	Jurkat	blood:	n/a
5	chr6:118910203-118910253	MCF-7	breast:	n/a
6	chr6:118903047-118903097	SAEC	small airway:	n/a
7	chr6:118903047-118903097	GM19239	blood:	n/a
8	chr6:118910203-118910253	SK-N-SH	brain:	n/a
9	chr6:118909918-118909968	AG04449	skin:	fetal
10	chr6:118910203-118910253	GM06990	blood:	n/a
11	chr6:118903047-118903097	ECC-1	luminal epithelium:	n/a
12	chr6:118903047-118903097	MCF10A-Er-Src	breast:	n/a
13	chr6:118910203-118910253	AG04449	skin:	fetal
14	chr6:118903047-118903097	PrEC	prostate:	n/a
15	chr6:118910203-118910253	LNCaP	prostate:	n/a
16	chr6:118909918-118909968	GM12892	blood:	n/a
17	chr6:118909918-118909968	MCF-7	breast:	n/a
18	chr6:118909918-118909968	SK-N-MC	brain:	n/a
19	chr6:118909918-118909968	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:118909918-118909968	BE2_C	brain:	n/a
21	chr6:118910203-118910253	SK-N-SH_RA	brain:	n/a
22	chr6:118910203-118910253	RPTEC	kidney:	n/a
23	chr6:118909918-118909968	HRCEpiC	kidney:	n/a
24	chr6:118909918-118909968	NB4	blood:	n/a
25	chr6:118910203-118910253	HepG2	liver:	n/a
26	chr6:118903047-118903097	HCF	heart:	n/a
27	chr6:118910203-118910253	SK-N-MC	brain:	n/a
28	chr6:118903047-118903097	HEEpiC	esophagus:	n/a
29	chr6:118909918-118909968	H1-hESC	embryonic stem cell:	embryo
30	chr6:118903047-118903097	NH-A	brain:	n/a
31	chr6:118910203-118910253	HIPEpiC	eye:	n/a
32	chr6:118910203-118910253	IMR90	lung:	fetal
33	chr6:118903047-118903097	SK-N-MC	brain:	n/a
34	chr6:118909918-118909968	HNPCEpiC	eye:	n/a
35	chr6:118909918-118909968	ProgFib	skin:	n/a
36	chr6:118903047-118903097	T-47D	breast:	n/a
37	chr6:118903047-118903097	H1-hESC	embryonic stem cell:	embryo
38	chr6:118910203-118910253	HEEpiC	esophagus:	n/a
39	chr6:118909918-118909968	HCT-116	colon:	n/a
40	chr6:118909918-118909968	HRPEpiC	eye:	n/a
41	chr6:118903047-118903097	Caco-2	colon:	n/a
42	chr6:118909918-118909968	NHDF-neo	bronchial:	n/a
43	chr6:118903047-118903097	AG09319	gingival:	n/a
44	chr6:118910203-118910253	HRE	kidney:	n/a
45	chr6:118909918-118909968	PrEC	prostate:	n/a
46	chr6:118903047-118903097	HIPEpiC	eye:	n/a
47	chr6:118909918-118909968	T-47D	breast:	n/a
48	chr6:118910203-118910253	HCM	heart:	n/a
49	chr6:118910203-118910253	T-47D	breast:	n/a
50	chr6:118909918-118909968	AG09309	skin:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:118901771..118902663-chr6:118939336..118940142,2	MCF-7	breast:
2	chr6:118902893..118904568-chr6:119037058..119039645,2	K562	blood:
3	chr6:118891339..118892286-chr6:118901717..118902627,2	MCF-7	breast:
4	chr6:118911659..118913599-chr6:118915475..118918005,2	K562	blood:
5	chr6:118902952..118905551-chr6:118908184..118910099,2	K562	blood:
6	chr6:118904992..118906769-chr6:118911798..118913506,2	MCF-7	breast:
7	chr6:118902952..118905551-chr6:118908184..118910099,2	K562	blood:
8	chr6:118905497..118907408-chr6:118920434..118922584,2	MCF-7	breast:
9	chr6:118904992..118906769-chr6:118911798..118913506,2	MCF-7	breast:
10	chr6:118296887..118298128-chr6:118901357..118902666,4	K562	blood:
11	chr6:118605722..118606318-chr6:118901882..118902460,2	MCF-7	breast:
12	chr6:118886432..118887044-chr6:118901651..118902441,2	MCF-7	breast:
13	chr6:118891392..118892944-chr6:118901101..118903133,2	K562	blood:
14	chr6:118829899..118830781-chr6:118901492..118902427,2	MCF-7	breast:

No data

Variant related genes	Relation type
SSXP10	TF binding region
SSXP10	CpG island

Extended variants
information (count: 468 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:468 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12528697	chr6:118900772-118900773	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs542112037	chr6:118900782-118900783	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs139808656	chr6:118900810-118900811	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs144721261	chr6:118900828-118900829	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs554544531	chr6:118900840-118900841	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs9489447	chr6:118900846-118900847	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs115137200	chr6:118900854-118900855	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs147887717	chr6:118900859-118900860	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs533753935	chr6:118900871-118900872	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs539372047	chr6:118900879-118900880	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs181093055	chr6:118900905-118900906	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs566879112	chr6:118900929-118900930	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs11968176	chr6:118900940-118900941	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs555946923	chr6:118900996-118900997	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs185666225	chr6:118901001-118901002	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs12209500	chr6:118901012-118901013	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs139883295	chr6:118901029-118901030	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs372227701	chr6:118901043-118901044	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs540575369	chr6:118901047-118901048	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs190772683	chr6:118901060-118901061	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs35192851	chr6:118901103-118901104	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537493814	chr6:118901145-118901146	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs113611801	chr6:118901159-118901160	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs541502396	chr6:118901177-118901178	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs532049410	chr6:118901195-118901196	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs561480234	chr6:118901218-118901219	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs556230740	chr6:118901233-118901234	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs530534811	chr6:118901252-118901253	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs550722798	chr6:118901276-118901277	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs73528703	chr6:118901278-118901279	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs577790498	chr6:118901296-118901297	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs533211968	chr6:118901299-118901300	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs546954255	chr6:118901307-118901308	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs149275704	chr6:118901357-118901358	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs373050067	chr6:118901358-118901359	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs73528704	chr6:118901376-118901377	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs535882486	chr6:118901393-118901394	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549486347	chr6:118901395-118901396	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs569302330	chr6:118901409-118901410	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs528586235	chr6:118901459-118901460	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs11968351	chr6:118901509-118901510	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs145420011	chr6:118901554-118901555	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs534212705	chr6:118901656-118901657	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs554071624	chr6:118901695-118901696	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs60184149	chr6:118901772-118901773	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs541389931	chr6:118901774-118901775	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs9489448	chr6:118901793-118901794	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs182951950	chr6:118901797-118901798	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs543005837	chr6:118901826-118901827	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543980218	chr6:118901857-118901858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Hypoplastic	20877625	CNVD
Hypotonia	20877625	CNVD
Mental retardation	20877625	CNVD
Microcephaly	20877625	CNVD
brachycephaly	20877625	CNVD
epicanthic folds	20877625	CNVD
micrognathia	20877625	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Metastatic melanoma	18483359	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	18698023	CNVD
Mental retardation	18854857	CNVD
Leukemia	18688285	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Liver carcinoma	19366792	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:369 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118894200-118902400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
2	chr6:118894400-118904200	ZNF genes & repeats	Dnd41	blood
3	chr6:118894800-118902600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr6:118895000-118902000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
5	chr6:118895200-118902000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr6:118895200-118902000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr6:118895200-118902800	ZNF genes & repeats	Thymus	Thymus
8	chr6:118895200-118903200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr6:118895600-118901800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:118895800-118911400	Weak transcription	Right Ventricle	heart
11	chr6:118896000-118909400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:118896200-118901600	Weak transcription	Pancreas	Pancrea
13	chr6:118896200-118901600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:118896200-118901800	Weak transcription	Ovary	ovary
15	chr6:118896200-118902600	Weak transcription	Gastric	stomach
16	chr6:118896200-118910000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:118896400-118901600	Weak transcription	Left Ventricle	heart
18	chr6:118896800-118902400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:118897000-118901800	Weak transcription	Fetal Brain Male	brain
20	chr6:118897400-118902200	ZNF genes & repeats	Fetal Thymus	thymus
21	chr6:118899000-118901200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:118899000-118902400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
23	chr6:118899200-118901200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:118899400-118901000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:118899600-118901800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:118899600-118902600	Weak transcription	NHLF	lung
27	chr6:118899800-118901800	Weak transcription	Aorta	Aorta
28	chr6:118900000-118901400	Weak transcription	Psoas Muscle	Psoas
29	chr6:118900400-118901400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:118900400-118901600	Weak transcription	Primary T cells from cord blood	blood
31	chr6:118900400-118901600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:118900400-118901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:118900400-118901800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:118900400-118902200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:118900400-118902600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:118900400-118910200	Weak transcription	Fetal Lung	lung
37	chr6:118900400-118911200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:118900800-118902800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr6:118901000-118901200	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr6:118901000-118901200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
41	chr6:118901000-118901800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:118901000-118902200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:118901000-118902200	Enhancers	Brain Substantia Nigra	brain
44	chr6:118901000-118902200	ZNF genes & repeats	Fetal Stomach	stomach
45	chr6:118901000-118926200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:118901200-118901400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr6:118901200-118901600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:118901200-118901800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:118901200-118901800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:118901200-118902200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links