Variant report

Variant	nsv969464
Chromosome Location	chr6:160969132-160977810
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 387 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:387 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569785208	chr6:160969132-160969133	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139923613	chr6:160969152-160969153	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554447310	chr6:160969158-160969159	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556181696	chr6:160969222-160969223	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs188736747	chr6:160969232-160969233	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs553994345	chr6:160969253-160969254	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs181387670	chr6:160969256-160969257	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186579288	chr6:160969283-160969284	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs41264340	chr6:160969346-160969347	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532565840	chr6:160969353-160969354	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576188837	chr6:160969374-160969375	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374729633	chr6:160969382-160969383	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576047078	chr6:160969399-160969400	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546176245	chr6:160969408-160969409	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562138975	chr6:160969451-160969452	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs527926286	chr6:160969452-160969453	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs367957017	chr6:160969505-160969506	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs41264338	chr6:160969539-160969540	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201740563	chr6:160969546-160969547	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374480077	chr6:160969554-160969555	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549728571	chr6:160969558-160969559	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569746344	chr6:160969562-160969563	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368717561	chr6:160969572-160969573	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs41267811	chr6:160969584-160969585	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374395954	chr6:160969592-160969593	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs367988873	chr6:160969607-160969608	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368015284	chr6:160969613-160969614	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs199753374	chr6:160969618-160969619	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs1801693	chr6:160969629-160969630	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs201621981	chr6:160969645-160969646	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181994292	chr6:160969663-160969664	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs199599414	chr6:160969669-160969670	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143431368	chr6:160969693-160969694	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371880326	chr6:160969725-160969726	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs556173670	chr6:160969731-160969732	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs10755578	chr6:160969738-160969739	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
37	rs564017977	chr6:160969753-160969754	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541550730	chr6:160969789-160969790	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368500870	chr6:160969886-160969887	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs41264336	chr6:160969932-160969933	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572046734	chr6:160969960-160969961	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560318037	chr6:160969967-160969968	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541583039	chr6:160969971-160969972	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs151233762	chr6:160969976-160969977	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533426627	chr6:160970011-160970012	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372364331	chr6:160970060-160970061	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543754950	chr6:160970072-160970073	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375954063	chr6:160970194-160970195	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563335976	chr6:160970293-160970294	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs186530086	chr6:160970319-160970320	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Coronary Disease	20032323	CNVD
Coronary Disease	20335594	CNVD
Breast cancer	22522925	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Recurrent pregnancy loss	19789632	CNVD
Autism	21865298	CNVD
Schizophrenia	23813976	CNVD
Carotid artery disease	21127300	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160954400-160981000	Strong transcription	Liver	Liver
2	chr6:160968600-160974800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:160974800-160975200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
4	chr6:160975200-160977800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:160977800-160978400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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