Variant report

Variant	nsv969480
Chromosome Location	chr6:26932508-26939394
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2AG-3	chr6:26936237-26936301	XLOC_005216
2	lnc-HIST1H2AG-3	chr6:26936237-26936301	ENSG00000224843.2
3	lnc-HIST1H2AG-3	chr6:26936237-26936301	ENSG00000224843.2
4	lnc-HIST1H2AG-3	chr6:26936797-26936850	XLOC_005216
5	lnc-HIST1H2AG-3	chr6:26936797-26942146	ENSG00000224843.2
6	lnc-HIST1H2AG-3	chr6:26936241-26936301	NONHSAT108319
7	lnc-HIST1H2AG-3	chr6:26936237-26936301	NONHSAT108320

No data

Extended variants
information (count: 49 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12203587	chr6:26936240-26936241	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs184177158	chr6:26936258-26936259	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs188187116	chr6:26936264-26936265	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs536087181	chr6:26936280-26936281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs544881296	chr6:26936797-26936798	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs561611759	chr6:26936848-26936849	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs11966690	chr6:26936918-26936919	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs540861108	chr6:26936952-26936953	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs190305697	chr6:26936998-26936999	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs572949785	chr6:26937280-26937281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs532470477	chr6:26937343-26937344	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs182596197	chr6:26937379-26937380	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs562697050	chr6:26937397-26937398	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs185834861	chr6:26937430-26937431	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs555477093	chr6:26937522-26937523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs556003303	chr6:26937614-26937615	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs73737990	chr6:26937617-26937618	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs62402046	chr6:26937619-26937620	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs190540629	chr6:26937620-26937621	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs9379947	chr6:26937630-26937631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs181039410	chr6:26937631-26937632	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs147925578	chr6:26937830-26937831	Inactive region	lncRNA	n/a	Overlapped CNVs	mRNA abundance
23	rs558631118	chr6:26937861-26937862	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs575123902	chr6:26937882-26937883	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs537890266	chr6:26937909-26937910	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs113819627	chr6:26937992-26937993	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs200406534	chr6:26938021-26938022	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs537808427	chr6:26938209-26938210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs556242513	chr6:26938232-26938233	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs575149640	chr6:26938311-26938312	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs10498732	chr6:26938361-26938362	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs560432161	chr6:26938453-26938454	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs577376733	chr6:26938494-26938495	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs371262600	chr6:26938527-26938528	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs545970330	chr6:26938624-26938625	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs533073451	chr6:26938650-26938651	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs185533799	chr6:26938651-26938652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs112141494	chr6:26938681-26938682	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs561763475	chr6:26938687-26938688	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs529911417	chr6:26938725-26938726	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs546877275	chr6:26938755-26938756	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs566509725	chr6:26938845-26938846	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs527747920	chr6:26938921-26938922	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs564141530	chr6:26939012-26939013	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs538859708	chr6:26939035-26939036	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs551962559	chr6:26939235-26939236	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs569018130	chr6:26939263-26939264	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs545610931	chr6:26939304-26939305	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs528543342	chr6:26939322-26939323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Williams Syndrome	20824207	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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