Variant report

Variant	nsv969589
Chromosome Location	chr9:44059978-44063675
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:163 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558166911	chr9:44059995-44059996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs62536299	chr9:44060029-44060030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182606916	chr9:44060042-44060043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552996932	chr9:44060043-44060044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574635029	chr9:44060050-44060051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542066666	chr9:44060129-44060130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200644503	chr9:44060201-44060202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575842264	chr9:44060228-44060229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs62536300	chr9:44060268-44060269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs546309172	chr9:44060306-44060307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs564516832	chr9:44060325-44060326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528477444	chr9:44060372-44060373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200077386	chr9:44060373-44060374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200619101	chr9:44060374-44060375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs186872104	chr9:44060410-44060411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62536301	chr9:44060416-44060417	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs62536302	chr9:44060423-44060424	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs550792024	chr9:44060471-44060472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562729615	chr9:44060475-44060476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563385047	chr9:44060491-44060492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577201540	chr9:44060515-44060516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs546151873	chr9:44060551-44060552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530562174	chr9:44060557-44060558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551853785	chr9:44060591-44060592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570480938	chr9:44060594-44060595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs534333538	chr9:44060606-44060607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546542874	chr9:44060619-44060620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568291647	chr9:44060644-44060645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535729503	chr9:44060690-44060691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557232927	chr9:44060707-44060708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575506092	chr9:44060731-44060732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539591966	chr9:44060750-44060751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs557978164	chr9:44060791-44060792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376301211	chr9:44060836-44060837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377677474	chr9:44060910-44060911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540292460	chr9:44060914-44060915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529958210	chr9:44060943-44060944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562093038	chr9:44060944-44060945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574032162	chr9:44060962-44060963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182715478	chr9:44060963-44060964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562790173	chr9:44060971-44060972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533352912	chr9:44060982-44060983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551520602	chr9:44060992-44060993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564042437	chr9:44060994-44060995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528166888	chr9:44060996-44060997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs546311755	chr9:44061028-44061029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559760582	chr9:44061043-44061044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370795529	chr9:44061098-44061099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535794898	chr9:44061115-44061116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112622841	chr9:44061134-44061135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Oral cancer	21386901	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	21346763	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Lung adenocarcinoma	17086460	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Lung cancer	17086460	CNVD
Rhabdomyosarcoma	16790082	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:44057200-44070600	Weak transcription	Liver	Liver

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