Variant report

Variant	nsv970047
Chromosome Location	chr6:75713017-75721589
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 609 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:609 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113927978	chr6:75713057-75713058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541926254	chr6:75713072-75713073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs190065912	chr6:75713090-75713091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140999065	chr6:75713094-75713095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552539625	chr6:75713097-75713098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370043959	chr6:75713098-75713099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs550770416	chr6:75713100-75713101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564365605	chr6:75713118-75713119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182215716	chr6:75713135-75713136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550496856	chr6:75713151-75713152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187231012	chr6:75713172-75713173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112075492	chr6:75713199-75713200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372444205	chr6:75713204-75713205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547708814	chr6:75713205-75713206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs6906424	chr6:75713212-75713213	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs547885484	chr6:75713228-75713229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529927620	chr6:75713275-75713276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539203399	chr6:75713292-75713293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116312721	chr6:75713298-75713299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192477238	chr6:75713299-75713300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182202063	chr6:75713313-75713314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112876304	chr6:75713323-75713324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs185188916	chr6:75713400-75713401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190048429	chr6:75713417-75713418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113896429	chr6:75713425-75713426	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112398977	chr6:75713432-75713433	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs182582169	chr6:75713444-75713445	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs564427990	chr6:75713454-75713455	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs531759357	chr6:75713472-75713473	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201442029	chr6:75713474-75713475	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs6906951	chr6:75713477-75713478	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs529588037	chr6:75713519-75713520	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534829104	chr6:75713541-75713542	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546697005	chr6:75713555-75713556	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140036573	chr6:75713563-75713564	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539477753	chr6:75713572-75713573	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs6907120	chr6:75713573-75713574	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs386702771	chr6:75713601-75713602	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs140230987	chr6:75713602-75713603	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554974804	chr6:75713604-75713605	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150292073	chr6:75713606-75713607	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs34186774	chr6:75713612-75713613	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113110000	chr6:75713622-75713623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368831010	chr6:75713625-75713626	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553092177	chr6:75713629-75713630	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs111870533	chr6:75713638-75713639	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546248879	chr6:75713668-75713669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571359821	chr6:75713681-75713682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113790495	chr6:75713706-75713707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576644018	chr6:75713715-75713716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelodysplastic syndrome	18508791	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75703000-75716200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75707800-75721600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:75713400-75713800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:75721400-75722000	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links