Variant report

Variant	nsv970136
Chromosome Location	chr6:66546765-66547863
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EYS-3	chr6:66546777-66547055	NONHSAT113376
2	lnc-EYS-3	chr6:66547135-66547298	NONHSAT113376

Extended variants
information (count: 30 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6928366	chr6:66546778-66546779	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs6928383	chr6:66546812-66546813	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs544698134	chr6:66546842-66546843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs6906215	chr6:66546862-66546863	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs143226349	chr6:66546881-66546882	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs544997152	chr6:66546890-66546891	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs560988563	chr6:66546907-66546908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs6932890	chr6:66546916-66546917	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs61732140	chr6:66546941-66546942	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs569862650	chr6:66546966-66546967	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs372610548	chr6:66546977-66546978	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs372524602	chr6:66547002-66547003	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs16897244	chr6:66547005-66547006	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs61732150	chr6:66547007-66547008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs6905102	chr6:66547026-66547027	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs185514204	chr6:66547050-66547051	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs555254524	chr6:66547053-66547054	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs574988446	chr6:66547055-66547056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs190432166	chr6:66547151-66547152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs61732135	chr6:66547174-66547175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs4392709	chr6:66547178-66547179	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs180748049	chr6:66547186-66547187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs139257050	chr6:66547189-66547190	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs540626405	chr6:66547205-66547206	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs61732136	chr6:66547236-66547237	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs529989161	chr6:66547242-66547243	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs12662058	chr6:66547243-66547244	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs563509561	chr6:66547283-66547284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs61732137	chr6:66547293-66547294	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs184440395	chr6:66547296-66547297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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