Variant report
Variant | nsv970162 |
---|---|
Chromosome Location | chr6:126801702-126819420 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 1)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr6:126818105-126818137 | GM13977 | blood: | n/a | n/a |
2 | EP300 | chr6:126802277-126803162 | SK-N-SH | brain: | n/a | n/a |
3 | EP300 | chr6:126802498-126802802 | SK-N-SH_RA | brain: | n/a | n/a |
4 | GATA2 | chr6:126802528-126802814 | SH-SY5Y | brain: | n/a | n/a |
5 | GATA3 | chr6:126802280-126803092 | SH-SY5Y | brain: | n/a | n/a |
6 | JUN | chr6:126816449-126816505 | K562 | blood: | n/a | n/a |
7 | KAP1 | chr6:126807408-126807662 | HEK293 | kidney: | n/a | n/a |
8 | MAFF | chr6:126803118-126803326 | HepG2 | liver: | n/a | chr6:126803182-126803200 |
9 | MAFK | chr6:126803048-126803328 | HepG2 | liver: | n/a | chr6:126803183-126803198 |
10 | MAFK | chr6:126804334-126804606 | HepG2 | liver: | n/a | chr6:126804444-126804459 |
11 | MAFK | chr6:126804450-126804480 | HepG2 | liver: | n/a | n/a |
12 | MAFK | chr6:126814658-126814793 | HepG2 | liver: | n/a | n/a |
13 | MAFK | chr6:126803089-126803277 | HepG2 | liver: | n/a | chr6:126803183-126803198 |
14 | MXI1 | chr6:126802388-126802991 | SK-N-SH | brain: | n/a | n/a |
15 | STAT3 | chr6:126813378-126813591 | MCF10A-Er-Src | breast: | n/a | n/a |
16 | USF1 | chr6:126802502-126802697 | SK-N-SH_RA | brain: | n/a | n/a |
17 | USF1 | chr6:126802522-126802717 | SK-N-SH_RA | brain: | n/a | n/a |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CENPW-2 | chr6:126801724-126802340 | NONHSAT114828 |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-588 | chr6:126805792-126805812 | MIMAT0003255 |
No data |
Variant related genes | Relation type |
---|---|
MIR588 | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs184317904 | chr6:126801704-126801705 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs368934920 | chr6:126801771-126801772 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs78778646 | chr6:126801789-126801790 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs188007752 | chr6:126801794-126801795 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs192640082 | chr6:126801847-126801848 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs17053972 | chr6:126801917-126801918 | Enhancers | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs184258483 | chr6:126802014-126802015 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs201981770 | chr6:126802077-126802078 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs7769341 | chr6:126802081-126802082 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs573717528 | chr6:126802156-126802157 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
11 | rs377406471 | chr6:126802159-126802160 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs188909835 | chr6:126802207-126802208 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs181607303 | chr6:126802260-126802261 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs114184770 | chr6:126802299-126802300 | Enhancers | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs563522334 | chr6:126802317-126802318 | Enhancers | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs184710876 | chr6:126802354-126802355 | Enhancers | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs549101489 | chr6:126802377-126802378 | Enhancers | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs560939645 | chr6:126802412-126802413 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs528515919 | chr6:126802432-126802433 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs190341580 | chr6:126802440-126802441 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs571809969 | chr6:126802443-126802444 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs35798760 | chr6:126802518-126802519 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs182516085 | chr6:126802521-126802522 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs185857760 | chr6:126802543-126802544 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs374419713 | chr6:126802546-126802547 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs7753563 | chr6:126802598-126802599 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | mRNA abundance |
27 | rs537130686 | chr6:126802706-126802707 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs538135899 | chr6:126802721-126802722 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs567352626 | chr6:126802798-126802799 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs555546983 | chr6:126802815-126802816 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs537675019 | chr6:126802822-126802823 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs573782105 | chr6:126802865-126802866 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs142539942 | chr6:126802891-126802892 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs552948766 | chr6:126802962-126802963 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs191105212 | chr6:126802975-126802976 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs115573932 | chr6:126803006-126803007 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs563324090 | chr6:126803047-126803048 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs181086569 | chr6:126803070-126803071 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs185519662 | chr6:126803074-126803075 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs190323634 | chr6:126803098-126803099 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs528574469 | chr6:126803131-126803132 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs9375442 | chr6:126803137-126803138 | Inactive region | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs565307392 | chr6:126803163-126803164 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs375832239 | chr6:126803184-126803185 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs532677180 | chr6:126803202-126803203 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs373231666 | chr6:126803250-126803251 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs146011011 | chr6:126803259-126803260 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs569345931 | chr6:126803264-126803265 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs530431310 | chr6:126804501-126804502 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs79033745 | chr6:126804561-126804562 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Autism | 22495311 | CNVD |
Gastric cancer | 17908304 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Prostate cancer | 18632612 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Wilms tumour | 21544195 | CNVD |
Prostate cancer | 19242612 | CNVD |
Glioma | 21046410 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 17603634 | CNVD |
Chondromyxoid Fibroma | 20696777 | CNVD |
Cancer | 21183584 | CNVD |
Developmental delay | 19490664 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Breast cancer | 21785460 | CNVD |
Neurocytoma | 17123091 | CNVD |
Chordoma | 21602918 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17133270 | CNVD |
Follicular lymphoma | 18703704 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Metastatic melanoma | 18483359 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Ependymoma | 18628472 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Breast cancer | 21364760 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Breast cancer | 21958427 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:126801000-126802400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
2 | chr6:126804800-126807200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |