Variant report

Variant	nsv970183
Chromosome Location	chr6:160903531-160908726
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPA-6	chr6:160902420-160903851	NONHSAT115906
2	lnc-LPA-6	chr6:160904377-160904406	NONHSAT115906

Extended variants
information (count: 268 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:268 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191070449	chr6:160903548-160903549	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs570878595	chr6:160903550-160903551	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs538803445	chr6:160903596-160903597	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs552413405	chr6:160903610-160903611	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs9355804	chr6:160903622-160903623	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs556753050	chr6:160903715-160903716	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs554261007	chr6:160903716-160903717	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs571813535	chr6:160903727-160903728	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs574401047	chr6:160903729-160903730	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs147325355	chr6:160903734-160903735	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs202150465	chr6:160903738-160903739	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs73784211	chr6:160903781-160903782	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs369257519	chr6:160903782-160903783	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs200113748	chr6:160903811-160903812	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs560312367	chr6:160903848-160903849	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs12207325	chr6:160903911-160903912	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs576318825	chr6:160903951-160903952	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374194499	chr6:160903956-160903957	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561915248	chr6:160903992-160903993	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542745484	chr6:160903998-160903999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185561031	chr6:160904030-160904031	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541083038	chr6:160904049-160904050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs562527759	chr6:160904063-160904064	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs139619798	chr6:160904069-160904070	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538909225	chr6:160904087-160904088	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs111727235	chr6:160904089-160904090	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533470827	chr6:160904152-160904153	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs552399330	chr6:160904165-160904166	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs569115177	chr6:160904170-160904171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs183026662	chr6:160904171-160904172	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112887134	chr6:160904174-160904175	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548434871	chr6:160904181-160904182	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564701966	chr6:160904193-160904194	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs113715379	chr6:160904209-160904210	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs533712568	chr6:160904219-160904220	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs533739713	chr6:160904238-160904239	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs553488271	chr6:160904252-160904253	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs570208707	chr6:160904253-160904254	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs2457569	chr6:160904256-160904257	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs556322033	chr6:160904270-160904271	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs371281476	chr6:160904272-160904273	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs567060036	chr6:160904273-160904274	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs576258365	chr6:160904289-160904290	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535613894	chr6:160904339-160904340	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs142853940	chr6:160904365-160904366	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs555992817	chr6:160904404-160904405	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs572659834	chr6:160904437-160904438	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs541372289	chr6:160904444-160904445	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113538566	chr6:160904531-160904532	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187744385	chr6:160904619-160904620	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Coronary Disease	20032323	CNVD
Coronary Disease	20335594	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160884200-160904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:160884400-160928200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:160893800-160921800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:160893800-160923200	Strong transcription	Liver	Liver
5	chr6:160894400-160915200	Weak transcription	Esophagus	oesophagus
6	chr6:160894800-160923800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:160897000-160914200	Weak transcription	Gastric	stomach
8	chr6:160897800-160908400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:160897800-160923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:160898000-160908000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:160898000-160922800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:160898200-160906200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:160899600-160905200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:160900200-160911400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:160900400-160923400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:160901400-160909600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:160901600-160908800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:160902000-160903600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr6:160902000-160903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:160902000-160921000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:160902200-160904600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:160902200-160904600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:160902200-160908200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr6:160902200-160914200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:160902400-160908000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:160902600-160903600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:160902600-160905400	Strong transcription	Ovary	ovary
28	chr6:160902600-160908200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:160902800-160903600	Strong transcription	Brain Hippocampus Middle	brain
30	chr6:160902800-160904800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:160902800-160907000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:160902800-160915400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:160902800-160923000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:160903000-160904200	Weak transcription	Pancreas	Pancrea
35	chr6:160903000-160907000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:160903000-160908400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:160903000-160913200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:160903200-160904200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:160903200-160905000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:160903200-160905200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:160903200-160908200	Strong transcription	Aorta	Aorta
42	chr6:160903200-160909200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:160903200-160914000	Weak transcription	Brain Angular Gyrus	brain
44	chr6:160903400-160903600	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:160903400-160904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:160903400-160913800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:160903400-160923400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:160903600-160904200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:160903600-160912400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:160903600-160923800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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