Variant report

Variant	nsv970184
Chromosome Location	chr6:160908726-160912180
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531557256	chr6:160908753-160908754	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs371883265	chr6:160908786-160908787	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148983919	chr6:160908799-160908800	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143794409	chr6:160908822-160908823	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73593001	chr6:160908834-160908835	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs386707825	chr6:160908847-160908848	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs187172200	chr6:160908850-160908851	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9456544	chr6:160908853-160908854	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs369729524	chr6:160908854-160908855	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191630939	chr6:160908865-160908866	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576664418	chr6:160908922-160908923	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs535807830	chr6:160908925-160908926	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148179001	chr6:160908935-160908936	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572323936	chr6:160909045-160909046	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114983344	chr6:160909067-160909068	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62441873	chr6:160909068-160909069	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs578149310	chr6:160909069-160909070	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184213126	chr6:160909074-160909075	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188244209	chr6:160909126-160909127	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs114842221	chr6:160909127-160909128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs193176529	chr6:160909194-160909195	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112216343	chr6:160909211-160909212	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs55649652	chr6:160909226-160909227	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs546990797	chr6:160909265-160909266	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545144863	chr6:160909266-160909267	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369413050	chr6:160909327-160909328	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs570208690	chr6:160909418-160909419	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs539187669	chr6:160909421-160909422	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550333368	chr6:160909450-160909451	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373032987	chr6:160909452-160909453	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185474284	chr6:160909467-160909468	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558330791	chr6:160909511-160909512	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536070422	chr6:160909513-160909514	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555751584	chr6:160909514-160909515	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs35008008	chr6:160909568-160909569	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572788866	chr6:160909593-160909594	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111497365	chr6:160909660-160909661	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141834709	chr6:160909667-160909668	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558233667	chr6:160909698-160909699	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs112358730	chr6:160909703-160909704	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543578257	chr6:160909726-160909727	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190794147	chr6:160909780-160909781	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576120411	chr6:160909782-160909783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113801672	chr6:160909796-160909797	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561787146	chr6:160909802-160909803	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs527624550	chr6:160909810-160909811	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs73593002	chr6:160909822-160909823	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs73784214	chr6:160909848-160909849	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs180841302	chr6:160909889-160909890	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4355633	chr6:160909896-160909897	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Coronary Disease	20032323	CNVD
Coronary Disease	20335594	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160884400-160928200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:160893800-160921800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:160893800-160923200	Strong transcription	Liver	Liver
4	chr6:160894400-160915200	Weak transcription	Esophagus	oesophagus
5	chr6:160894800-160923800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:160897000-160914200	Weak transcription	Gastric	stomach
7	chr6:160897800-160923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:160898000-160922800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:160900200-160911400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:160900400-160923400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:160901400-160909600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:160901600-160908800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:160902000-160921000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:160902200-160914200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:160902800-160915400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:160902800-160923000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:160903000-160913200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:160903200-160909200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:160903200-160914000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:160903400-160913800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:160903400-160923400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:160903600-160912400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:160903600-160923800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:160903600-160924000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:160904400-160920600	Weak transcription	Pancreas	Pancrea
26	chr6:160904600-160912000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:160904800-160924000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:160905000-160911400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:160905200-160911200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:160905200-160923000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:160905400-160923400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:160905400-160924800	Weak transcription	Ovary	ovary
33	chr6:160908000-160912200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:160908200-160911400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:160908200-160916800	Weak transcription	Aorta	Aorta
36	chr6:160908200-160920800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:160908400-160912400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:160908800-160911800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:160909200-160909600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:160911200-160912000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:160911400-160913200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:160911400-160914200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr6:160911800-160914400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:160912000-160913200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:160912000-160924000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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