Variant report

Variant	nsv970191
Chromosome Location	chr6:163377321-163378624
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-14	chr6:163378290-163378580	NONHSAT115947

Extended variants
information (count: 51 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555093104	chr6:163377358-163377359	Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs561036915	chr6:163377359-163377360	Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs574830838	chr6:163377368-163377369	Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
4	rs540660261	chr6:163377399-163377400	Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
5	rs141304699	chr6:163377419-163377420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577142625	chr6:163377428-163377429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185448105	chr6:163377436-163377437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs562750586	chr6:163377540-163377541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs376991690	chr6:163377545-163377546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs531883630	chr6:163377556-163377557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs75751827	chr6:163377567-163377568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189570893	chr6:163377592-163377593	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs180824541	chr6:163377622-163377623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs369802100	chr6:163377623-163377624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs373568731	chr6:163377704-163377705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs375578397	chr6:163377705-163377706	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs570432479	chr6:163377742-163377743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs146183182	chr6:163377832-163377833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs185881571	chr6:163377844-163377845	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs137882437	chr6:163377852-163377853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs569849667	chr6:163377887-163377888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs386708097	chr6:163377906-163377907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs572806693	chr6:163377923-163377924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs190253555	chr6:163377928-163377929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs181112083	chr6:163377942-163377943	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs540334425	chr6:163377944-163377945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs565041706	chr6:163377983-163377984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs142499642	chr6:163378037-163378038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs534010026	chr6:163378068-163378069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs553767580	chr6:163378077-163378078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs73607813	chr6:163378084-163378085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546090247	chr6:163378098-163378099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs562887943	chr6:163378119-163378120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs576652465	chr6:163378139-163378140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs186149177	chr6:163378163-163378164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs75392391	chr6:163378183-163378184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs12194418	chr6:163378215-163378216	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs527402456	chr6:163378253-163378254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs541092311	chr6:163378265-163378266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs564074699	chr6:163378286-163378287	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs7765189	chr6:163378291-163378292	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs549794023	chr6:163378307-163378308	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs145964791	chr6:163378322-163378323	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs529157144	chr6:163378337-163378338	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs549184326	chr6:163378365-163378366	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs115684278	chr6:163378407-163378408	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs534034900	chr6:163378439-163378440	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs191460151	chr6:163378511-163378512	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs570605285	chr6:163378526-163378527	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs371214682	chr6:163378552-163378553	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163377200-163377400	Bivalent Enhancer	Fetal Heart	heart
2	chr6:163377400-163379800	Enhancers	Fetal Heart	heart
3	chr6:163378200-163378600	Enhancers	Right Atrium	heart
4	chr6:163378600-163380800	Weak transcription	Right Atrium	heart

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