Variant report

Variant	nsv970193
Chromosome Location	chr6:167786364-167805295
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:176)
CpG islands
(count:915)
Chromatin interactive
region (count:0)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:176 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr6:167801477-167801674	GM12878	blood:	n/a	n/a
2	BCL11A	chr6:167799353-167799569	GM12878	blood:	n/a	n/a
3	BCL11A	chr6:167801917-167802109	GM12878	blood:	n/a	n/a
4	BCL11A	chr6:167801472-167801775	GM12878	blood:	n/a	n/a
5	BCL11A	chr6:167801474-167801790	GM12878	blood:	n/a	n/a
6	BCL11A	chr6:167800632-167800815	GM12878	blood:	n/a	n/a
7	CBX3	chr6:167800537-167800803	K562	blood:	n/a	n/a
8	CTCF	chr6:167789420-167789570	HEK293	kidney:	n/a	n/a
9	CTCF	chr6:167789440-167789590	BE2_C	brain:	n/a	n/a
10	CTCF	chr6:167789388-167789559	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr6:167803421-167803496	GM10248	blood:	n/a	n/a
12	CTCF	chr6:167789340-167789490	SK-N-SH_RA	brain:	n/a	n/a
13	CTCF	chr6:167789400-167789550	WERI-Rb-1	eye:	n/a	n/a
14	CTCF	chr6:167802765-167802797	Lung_OC	lung:	n/a	n/a
15	CTCF	chr6:167786760-167786910	GM12872	blood:	n/a	n/a
16	CTCF	chr6:167789340-167789490	HA-sp	spinal cord:	n/a	n/a
17	CTCF	chr6:167789420-167789570	WERI-Rb-1	eye:	n/a	n/a
18	CTCF	chr6:167789400-167789550	HCT-116	colon:	n/a	n/a
19	CTCF	chr6:167789460-167789610	HEK293	kidney:	n/a	n/a
20	CTCF	chr6:167789357-167789577	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr6:167789400-167789550	Caco-2	colon:	n/a	n/a
22	CTCF	chr6:167789339-167789607	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr6:167789460-167789610	BE2_C	brain:	n/a	n/a
24	CTCF	chr6:167789390-167789517	HepG2	liver:	n/a	n/a
25	CTCF	chr6:167803194-167803223	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr6:167789400-167789550	HepG2	liver:	n/a	n/a
27	CTCF	chr6:167794893-167794943	GM20000	blood:	n/a	n/a
28	EBF1	chr6:167800633-167800823	GM12878	blood:	n/a	n/a
29	EBF1	chr6:167799317-167799670	GM12878	blood:	n/a	n/a
30	EBF1	chr6:167800374-167800567	GM12878	blood:	n/a	n/a
31	EBF1	chr6:167801477-167801660	GM12878	blood:	n/a	n/a
32	EP300	chr6:167800291-167802181	GM12878	blood:	n/a	n/a
33	EP300	chr6:167799221-167799724	GM12878	blood:	n/a	n/a
34	EP300	chr6:167799436-167799593	GM12878	blood:	n/a	n/a
35	EP300	chr6:167801907-167802072	GM12878	blood:	n/a	n/a
36	EP300	chr6:167801483-167801753	GM12878	blood:	n/a	n/a
37	FOSL2	chr6:167801435-167801780	HepG2	liver:	n/a	n/a
38	FOSL2	chr6:167786539-167787335	HepG2	liver:	n/a	n/a
39	FOSL2	chr6:167799343-167799781	HepG2	liver:	n/a	n/a
40	FOSL2	chr6:167799990-167802190	HepG2	liver:	n/a	n/a
41	FOSL2	chr6:167786167-167786482	HepG2	liver:	n/a	n/a
42	FOSL2	chr6:167799201-167799903	HepG2	liver:	n/a	n/a
43	FOSL2	chr6:167786546-167787200	HepG2	liver:	n/a	n/a
44	FOXA1	chr6:167786783-167787257	HepG2	liver:	n/a	n/a
45	GATA2	chr6:167799305-167799604	K562	blood:	n/a	n/a
46	GATA2	chr6:167801141-167801746	K562	blood:	n/a	n/a
47	GATA2	chr6:167800336-167801088	K562	blood:	n/a	n/a
48	GATA2	chr6:167801829-167802081	K562	blood:	n/a	n/a
49	HEY1	chr6:167786617-167787274	HepG2	liver:	n/a	n/a
50	HEY1	chr6:167786228-167786480	HepG2	liver:	n/a	n/a

(count:915 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:167789195-167789245	HAEpiC	amniotic membrane:	n/a
2	chr6:167792181-167792231	NB4	blood:	n/a
3	chr6:167791114-167791164	ProgFib	skin:	n/a
4	chr6:167786592-167786642	NH-A	brain:	n/a
5	chr6:167794506-167794556	Hepatocyte	liver:	n/a
6	chr6:167797877-167797927	HL-60	blood:	n/a
7	chr6:167791024-167791074	PANC-1	pancreas:	n/a
8	chr6:167786592-167786642	AoSMC	blood vessel:	n/a
9	chr6:167791024-167791074	HRPEpiC	eye:	n/a
10	chr6:167786642-167786692	U87	brain:	n/a
11	chr6:167786592-167786642	SK-N-MC	brain:	n/a
12	chr6:167789539-167789589	K562	blood:	n/a
13	chr6:167789195-167789245	AoSMC	blood vessel:	n/a
14	chr6:167792181-167792231	CMK	blood:	n/a
15	chr6:167797877-167797927	ovcar-3	ovarian:	n/a
16	chr6:167791114-167791164	HEK293	kidney:	embryo
17	chr6:167791114-167791164	HPAEpiC	pulmonary alveolar:	n/a
18	chr6:167791114-167791164	Hepatocyte	liver:	n/a
19	chr6:167794374-167794424	GM12891	blood:	n/a
20	chr6:167789195-167789245	PrEC	prostate:	n/a
21	chr6:167792181-167792231	AG04449	skin:	fetal
22	chr6:167791114-167791164	NHBE	bronchial:	n/a
23	chr6:167794506-167794556	HEK293	kidney:	embryo
24	chr6:167789441-167789491	HepG2	liver:	n/a
25	chr6:167797877-167797927	H1-hESC	embryonic stem cell:	embryo
26	chr6:167791114-167791164	Hela-S3	cervix:	n/a
27	chr6:167789195-167789245	MCF-7	breast:	n/a
28	chr6:167791153-167791203	GM06990	blood:	n/a
29	chr6:167803413-167803463	PrEC	prostate:	n/a
30	chr6:167791153-167791203	A549	lung:	n/a
31	chr6:167798410-167798460	ECC-1	luminal epithelium:	n/a
32	chr6:167791024-167791074	NH-A	brain:	n/a
33	chr6:167803413-167803463	IMR90	lung:	fetal
34	chr6:167789441-167789491	NH-A	brain:	n/a
35	chr6:167789195-167789245	HRE	kidney:	n/a
36	chr6:167789195-167789245	HCF	heart:	n/a
37	chr6:167786642-167786692	LNCaP	prostate:	n/a
38	chr6:167794374-167794424	NB4	blood:	n/a
39	chr6:167797877-167797927	AG04449	skin:	fetal
40	chr6:167791114-167791164	HL-60	blood:	n/a
41	chr6:167791153-167791203	HUVEC	blood vessel:	n/a
42	chr6:167803413-167803463	MCF10A-Er-Src	breast:	n/a
43	chr6:167789195-167789245	NH-A	brain:	n/a
44	chr6:167791153-167791203	HRE	kidney:	n/a
45	chr6:167792741-167792791	SK-N-MC	brain:	n/a
46	chr6:167789441-167789491	PFSK-1	brain:	n/a
47	chr6:167794374-167794424	HUVEC	blood vessel:	n/a
48	chr6:167797877-167797927	A549	lung:	n/a
49	chr6:167798410-167798460	HUVEC	blood vessel:	n/a
50	chr6:167797877-167797927	HCM	heart:	n/a

No data

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-1	chr6:167787839-167789289	NONHSAT116097
2	lnc-TTLL2-1	chr6:167803650-167803969	XLOC_005541
3	lnc-TCP10-1	chr6:167786578-167786848	NONHSAT116097
4	lnc-TTLL2-1	chr6:167804760-167804979	XLOC_005541

No data

Variant related genes	Relation type
TCP10	TF binding region
TCP10	CpG island

Extended variants
information (count: 654 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:654 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201963969	chr6:167786424-167786425	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557173190	chr6:167786445-167786446	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575397290	chr6:167786485-167786486	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545875773	chr6:167786550-167786551	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs146852129	chr6:167786551-167786552	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs528196448	chr6:167786563-167786564	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs3798324	chr6:167786574-167786575	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs375517388	chr6:167786593-167786594	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs539816886	chr6:167786614-167786615	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs369340315	chr6:167786623-167786624	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs529524933	chr6:167786627-167786628	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
12	rs372467539	chr6:167786642-167786643	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs62428279	chr6:167786643-167786644	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
14	rs370446616	chr6:167786651-167786652	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
15	rs181671268	chr6:167786673-167786674	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
16	rs377499408	chr6:167786681-167786682	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
17	rs140649985	chr6:167786686-167786687	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
18	rs375831091	chr6:167786687-167786688	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
19	rs201083342	chr6:167786689-167786690	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
20	rs146321515	chr6:167786690-167786691	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
21	rs367938179	chr6:167786692-167786693	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
22	rs555781659	chr6:167786700-167786701	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
23	rs567690005	chr6:167786703-167786704	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
24	rs200717360	chr6:167786714-167786715	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
25	rs372144507	chr6:167786727-167786728	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
26	rs143094588	chr6:167786750-167786751	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
27	rs78500930	chr6:167786757-167786758	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
28	rs200948850	chr6:167786761-167786762	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
29	rs575502722	chr6:167786765-167786766	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs371810273	chr6:167786783-167786784	Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs545630845	chr6:167786803-167786804	Enhancers Bivalent Enhancer Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
32	rs557950844	chr6:167786856-167786857	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs572819368	chr6:167786883-167786884	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs375849186	chr6:167786884-167786885	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs539976123	chr6:167786903-167786904	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs199709182	chr6:167786907-167786908	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs185908678	chr6:167786926-167786927	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs528905211	chr6:167786952-167786953	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs151165498	chr6:167786961-167786962	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs201342351	chr6:167786963-167786964	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs533682520	chr6:167786964-167786965	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs551655913	chr6:167786976-167786977	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs560771466	chr6:167786981-167786982	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs527763793	chr6:167786990-167786991	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs199865018	chr6:167786991-167786992	Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs549545456	chr6:167787019-167787020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs567653975	chr6:167787068-167787069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs200607106	chr6:167787079-167787080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs538199609	chr6:167787170-167787171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs377629713	chr6:167787201-167787202	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167785400-167786600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:167785400-167786600	Weak transcription	HepG2	liver
3	chr6:167786200-167786600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:167786400-167786600	Enhancers	Fetal Intestine Large	intestine
5	chr6:167786400-167786600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr6:167786600-167787000	Enhancers	Liver	Liver
7	chr6:167786600-167787000	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:167786600-167787000	Flanking Active TSS	Fetal Intestine Large	intestine
9	chr6:167786600-167787000	Flanking Active TSS	Fetal Intestine Small	intestine
10	chr6:167786600-167787000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:167786600-167787000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:167786600-167787000	Enhancers	Stomach Mucosa	stomach
13	chr6:167786600-167787000	Flanking Active TSS	HepG2	liver
14	chr6:167786800-167787000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr6:167787000-167787400	Enhancers	Fetal Intestine Large	intestine
16	chr6:167787000-167787600	Enhancers	HepG2	liver
17	chr6:167787000-167788000	Enhancers	Fetal Intestine Small	intestine
18	chr6:167787600-167791200	Weak transcription	HepG2	liver
19	chr6:167791000-167791200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:167791200-167791400	Enhancers	HepG2	liver
21	chr6:167791400-167791600	Bivalent Enhancer	HepG2	liver
22	chr6:167796200-167796400	Bivalent Enhancer	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links