Variant report

Variant	nsv970442
Chromosome Location	chr7:6369274-6370274
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAC1-2	chr7:6370213-6370871	NONHSAT118994
2	lnc-RAC1-2	chr7:6369092-6369444	NONHSAT118994

Extended variants
information (count: 71 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578088411	chr7:6369310-6369311	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs568651927	chr7:6369328-6369329	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529298055	chr7:6369368-6369369	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs148748731	chr7:6369394-6369395	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs370689518	chr7:6369395-6369396	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs545593814	chr7:6369461-6369462	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200211935	chr7:6369475-6369476	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547429683	chr7:6369517-6369518	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565859117	chr7:6369538-6369539	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539515839	chr7:6369576-6369577	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557816854	chr7:6369594-6369595	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570337816	chr7:6369595-6369596	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs537638473	chr7:6369608-6369609	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139601542	chr7:6369613-6369614	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189430311	chr7:6369627-6369628	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191813417	chr7:6369661-6369662	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553774507	chr7:6369669-6369670	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs117660632	chr7:6369694-6369695	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142911241	chr7:6369719-6369720	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572421275	chr7:6369725-6369726	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564167174	chr7:6369727-6369728	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531983201	chr7:6369758-6369759	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs147345785	chr7:6369761-6369762	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs562409705	chr7:6369763-6369764	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184355437	chr7:6369794-6369795	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547787432	chr7:6369804-6369805	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565772705	chr7:6369880-6369881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189037120	chr7:6369888-6369889	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543021363	chr7:6369889-6369890	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200127529	chr7:6369909-6369910	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139487674	chr7:6369916-6369917	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569803607	chr7:6369944-6369945	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs145117464	chr7:6369945-6369946	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs144968638	chr7:6369946-6369947	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs568363858	chr7:6369951-6369952	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs181708995	chr7:6369952-6369953	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201274764	chr7:6369976-6369977	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572118536	chr7:6369984-6369985	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201672957	chr7:6369986-6369987	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs557897784	chr7:6369987-6369988	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs374341740	chr7:6369992-6369993	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs377674158	chr7:6369994-6369995	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs151233913	chr7:6370025-6370026	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs370901935	chr7:6370042-6370043	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs199973666	chr7:6370043-6370044	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs374963213	chr7:6370047-6370048	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544017902	chr7:6370052-6370053	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs562110065	chr7:6370060-6370061	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs376469614	chr7:6370069-6370070	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2241445	chr7:6370077-6370078	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21045282	CNVD
Disorders of sex development	21048976	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	21525872	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6357800-6369400	Weak transcription	Brain Anterior Caudate	brain
2	chr7:6357800-6369400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:6357800-6369600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:6357800-6369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:6357800-6369600	Weak transcription	Fetal Thymus	thymus
6	chr7:6357800-6369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:6357800-6369800	Weak transcription	HSMMtube	muscle
8	chr7:6357800-6370200	Weak transcription	Fetal Intestine Small	intestine
9	chr7:6357800-6386200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:6358000-6369400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:6358000-6369400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:6358000-6369600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:6358000-6369600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:6358000-6370200	Weak transcription	Spleen	Spleen
15	chr7:6358000-6371600	Weak transcription	HMEC	breast
16	chr7:6358000-6372200	Weak transcription	NHDF-Ad	bronchial
17	chr7:6358000-6378400	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:6358000-6386000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:6358200-6369400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:6358200-6369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:6358200-6369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:6358200-6369600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:6358200-6369600	Weak transcription	Osteobl	bone
24	chr7:6358200-6369800	Weak transcription	Primary B cells from cord blood	blood
25	chr7:6358200-6370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:6358200-6370000	Weak transcription	Lung	lung
27	chr7:6358200-6370200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:6358200-6372200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:6358200-6372400	Weak transcription	Right Atrium	heart
30	chr7:6358200-6387200	Weak transcription	HepG2	liver
31	chr7:6358200-6387600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:6358200-6387600	Weak transcription	HSMM	muscle
33	chr7:6358200-6387600	Weak transcription	NH-A	brain
34	chr7:6358400-6369400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:6358400-6369400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:6358400-6369400	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:6358400-6369400	Weak transcription	Left Ventricle	heart
38	chr7:6358400-6369600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:6358800-6369400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:6360600-6370200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:6361800-6370200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:6362800-6369600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:6362800-6387800	Weak transcription	Fetal Lung	lung
44	chr7:6363000-6369400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:6363000-6369400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:6363000-6369400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:6363000-6369400	Weak transcription	Liver	Liver
48	chr7:6363000-6369600	Weak transcription	Brain Substantia Nigra	brain
49	chr7:6363000-6369600	Weak transcription	Fetal Intestine Large	intestine
50	chr7:6363000-6369600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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