Variant report

Variant	nsv970491
Chromosome Location	chr7:57336109-57342226
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:108 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567218409	chr7:57336124-57336125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs66908528	chr7:57336132-57336133	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs540084001	chr7:57336202-57336203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs570355630	chr7:57336205-57336206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs553521350	chr7:57336235-57336236	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs73124170	chr7:57336241-57336242	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs56390234	chr7:57336248-57336249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs192840745	chr7:57336262-57336263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs567794870	chr7:57336268-57336269	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs148737544	chr7:57336275-57336276	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs553544228	chr7:57336287-57336288	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs536099248	chr7:57336288-57336289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs565292597	chr7:57336298-57336299	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs142361489	chr7:57336356-57336357	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs558005920	chr7:57336373-57336374	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs577182028	chr7:57336398-57336399	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs183568098	chr7:57336487-57336488	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs188566976	chr7:57336527-57336528	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs554283782	chr7:57336534-57336535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs530212579	chr7:57336547-57336548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs542482976	chr7:57336622-57336623	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs560676192	chr7:57336633-57336634	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs527840325	chr7:57336637-57336638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs552611351	chr7:57336653-57336654	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs571110108	chr7:57336662-57336663	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs531236466	chr7:57336664-57336665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs73124172	chr7:57336665-57336666	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs113231601	chr7:57336666-57336667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs535187678	chr7:57336667-57336668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs376395231	chr7:57336683-57336684	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs192681843	chr7:57336719-57336720	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs565562225	chr7:57336759-57336760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs371274429	chr7:57336770-57336771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs13247758	chr7:57336793-57336794	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs576261408	chr7:57336794-57336795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs537896176	chr7:57336800-57336801	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs151239709	chr7:57336814-57336815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs574844768	chr7:57336817-57336818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs542344340	chr7:57336828-57336829	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs117389328	chr7:57336830-57336831	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs572713717	chr7:57336872-57336873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs546357314	chr7:57336898-57336899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs564673855	chr7:57336960-57336961	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs563091250	chr7:57336968-57336969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs12539899	chr7:57337045-57337046	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs550169514	chr7:57337052-57337053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs555573052	chr7:57337057-57337058	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs545692013	chr7:57337075-57337076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs561351417	chr7:57337080-57337081	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs77803995	chr7:57337099-57337100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Williams Syndrome	20824207	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57336000-57337600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr7:57341400-57343800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:57342000-57343200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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