Variant report

Variant	nsv970572
Chromosome Location	chr7:112617484-112621933
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf60-1	chr7:112620101-112620219	ENSG00000234520
2	lnc-C7orf60-1	chr7:112620101-112620219	ENSG00000234520
3	lnc-C7orf60-1	chr7:112620101-112620219	NR_110162
4	lnc-C7orf60-1	chr7:112620959-112621216	ENSG00000234520

Extended variants
information (count: 100 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139199692	chr7:112617485-112617486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146992662	chr7:112617517-112617518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555411973	chr7:112617519-112617520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573582087	chr7:112617534-112617535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541002928	chr7:112617540-112617541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs553031642	chr7:112617547-112617548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs577995096	chr7:112617555-112617556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117091825	chr7:112617573-112617574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543876991	chr7:112617583-112617584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs563485533	chr7:112617599-112617600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs530692007	chr7:112617608-112617609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542779471	chr7:112617693-112617694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561412249	chr7:112617698-112617699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs528511301	chr7:112617783-112617784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373712227	chr7:112617841-112617842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201168402	chr7:112617975-112617976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs3864651	chr7:112618119-112618120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546965075	chr7:112618202-112618203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554141577	chr7:112618243-112618244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs565487073	chr7:112618414-112618415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200584350	chr7:112618483-112618484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs550826825	chr7:112618484-112618485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569130632	chr7:112618525-112618526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2456937	chr7:112618528-112618529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs193008184	chr7:112618562-112618563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs184787251	chr7:112618577-112618578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567344233	chr7:112618599-112618600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs2456938	chr7:112618635-112618636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs115050854	chr7:112618680-112618681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs202242948	chr7:112618682-112618683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62491115	chr7:112618684-112618685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534365482	chr7:112618725-112618726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552938789	chr7:112618836-112618837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577672818	chr7:112619057-112619058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs188395684	chr7:112619090-112619091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538953520	chr7:112619095-112619096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs557267430	chr7:112619098-112619099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376571020	chr7:112619127-112619128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184864660	chr7:112619145-112619146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs575538698	chr7:112619202-112619203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542791465	chr7:112619291-112619292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs145469521	chr7:112619388-112619389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561267496	chr7:112619401-112619402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573285257	chr7:112619442-112619443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs540327213	chr7:112619464-112619465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75587310	chr7:112619471-112619472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564950897	chr7:112619474-112619475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532343465	chr7:112619504-112619505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs3911112	chr7:112619527-112619528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562824812	chr7:112619572-112619573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute lymphoblastic leukemia	21248843	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112594200-112630400	Weak transcription	Left Ventricle	heart
2	chr7:112621800-112622000	Enhancers	Primary B cells from cord blood	blood

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