Variant report

Variant	nsv970723
Chromosome Location	chr6:14997807-15023765
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14942413..14944482-chr6:15021624..15023866,2	MCF-7	breast:
2	chr6:15019075..15021891-chr6:15031714..15033767,2	K562	blood:
3	chr6:15021640..15023757-chr6:15243450..15245673,2	MCF-7	breast:
4	chr6:15016833..15019664-chr6:15022406..15025151,2	K562	blood:
5	chr6:15000392..15003019-chr6:15008822..15010417,2	K562	blood:
6	chr6:15015675..15017325-chr6:15020820..15023601,2	MCF-7	breast:
7	chr6:14881770..14884048-chr6:15014899..15017508,2	K562	blood:
8	chr6:15001971..15005699-chr6:15012973..15016102,3	MCF-7	breast:
9	chr6:15005280..15007907-chr6:15011280..15013327,2	K562	blood:
10	chr6:15016924..15018771-chr6:15065604..15067583,2	K562	blood:
11	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:
12	chr6:15014502..15016184-chr6:15471465..15473973,2	K562	blood:
13	chr6:15016604..15018126-chr6:15247080..15249476,2	K562	blood:
14	chr6:15023544..15025771-chr6:15064823..15066646,2	MCF-7	breast:
15	chr6:15023186..15025452-chr6:15025513..15027859,2	MCF-7	breast:
16	chr6:15021091..15023577-chr6:15036400..15038540,2	K562	blood:
17	chr6:14996389..14999164-chr6:15016282..15017980,2	K562	blood:
18	chr6:15016833..15018489-chr6:15081774..15084228,2	K562	blood:
19	chr6:15005280..15007907-chr6:15011280..15013327,2	K562	blood:
20	chr6:15015675..15017325-chr6:15020820..15023601,2	MCF-7	breast:
21	chr6:14996389..14999164-chr6:15016282..15017980,2	K562	blood:
22	chr6:14920549..14922410-chr6:15017214..15019242,2	K562	blood:
23	chr6:15015356..15017558-chr6:15021067..15023495,2	MCF-7	breast:
24	chr6:15016833..15019664-chr6:15022406..15025151,2	K562	blood:
25	chr6:15000392..15003019-chr6:15008822..15010417,2	K562	blood:
26	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:
27	chr6:15015356..15017558-chr6:15021067..15023495,2	MCF-7	breast:
28	chr6:15014025..15014906-chr6:15036946..15037491,2	MCF-7	breast:
29	chr6:15001971..15005699-chr6:15012973..15016102,3	MCF-7	breast:
30	chr6:15022607..15023116-chr6:15036750..15037271,2	MCF-7	breast:
31	chr6:15021072..15024779-chr6:15089168..15092500,5	MCF-7	breast:
32	chr6:15016388..15019055-chr6:15245142..15248397,3	K562	blood:
33	chr6:15016484..15018305-chr6:15062981..15064524,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:15009156-15009315	NONHSAT107859
2	lnc-DTNBP1-5	chr6:15022047-15022238	NONHSAT107859

No data

Variant related genes	Relation type
ENSG00000008083	chromatin interactions
ENSG00000235488	chromatin interactions
ENSG00000234261	chromatin interactions
ENSG00000271888	chromatin interactions

Extended variants
information (count: 995 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:995 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs367888933	chr6:14997832-14997833	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs551658010	chr6:14997861-14997862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs571731846	chr6:14997885-14997886	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547797915	chr6:14997890-14997891	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs16875991	chr6:14997921-14997922	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs536743343	chr6:14997929-14997930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs556758614	chr6:14997967-14997968	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs190813701	chr6:14998021-14998022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539338999	chr6:14998079-14998080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558949301	chr6:14998129-14998130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111976452	chr6:14998158-14998159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540651623	chr6:14998160-14998161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs28641719	chr6:14998162-14998163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs71535004	chr6:14998165-14998166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182004733	chr6:14998205-14998206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12526736	chr6:14998266-14998267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554140927	chr6:14998332-14998333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12530258	chr6:14998363-14998364	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs543108691	chr6:14998417-14998418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563500141	chr6:14998424-14998425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576936098	chr6:14998425-14998426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs546095885	chr6:14998430-14998431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559719071	chr6:14998431-14998432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113503884	chr6:14998433-14998434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145348130	chr6:14998456-14998457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561258884	chr6:14998520-14998521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs67121944	chr6:14998525-14998526	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs549976906	chr6:14998544-14998545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs146348460	chr6:14998568-14998569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539453755	chr6:14998649-14998650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538894702	chr6:14998733-14998734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs566382087	chr6:14998734-14998735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs566078108	chr6:14998758-14998759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534976187	chr6:14998764-14998765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139730453	chr6:14998780-14998781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs369224774	chr6:14998817-14998818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538467846	chr6:14998831-14998832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373011323	chr6:14998900-14998901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537172856	chr6:14998916-14998917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs1259060	chr6:14998954-14998955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs35885253	chr6:14998966-14998967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186221659	chr6:14998970-14998971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188210882	chr6:14998974-14998975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559588193	chr6:14999008-14999009	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs71535005	chr6:14999011-14999012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs573216485	chr6:14999049-14999050	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs542107711	chr6:14999057-14999058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs534959868	chr6:14999065-14999066	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs111942033	chr6:14999099-14999100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs530005719	chr6:14999101-14999102	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:376 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:14984600-15006600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:14985000-15001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14985000-15003800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:14985200-15006000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:14985600-15003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:14993600-15007200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:14996000-15001800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:14996200-15003600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:14996400-14999200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:14997200-14998000	Enhancers	K562	blood
13	chr6:14997400-15001400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:14997400-15002200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:14997600-14998000	Enhancers	Stomach Mucosa	stomach
16	chr6:14997600-15001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:14999000-14999600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:14999200-14999600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:14999200-14999800	Enhancers	NHEK	skin
20	chr6:14999200-15000000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:15000000-15001400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:15001200-15003200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:15001400-15001600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:15001400-15001800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:15001400-15002400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:15001600-15002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:15001600-15002400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:15001600-15002400	Enhancers	Fetal Muscle Leg	muscle
29	chr6:15001800-15002800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:15001800-15009200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:15002000-15002400	Enhancers	Fetal Lung	lung
32	chr6:15002000-15003000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:15002200-15004200	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr6:15002400-15003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:15002400-15006600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:15002800-15009600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:15003600-15004400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr6:15003600-15009200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:15003800-15004400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:15003800-15009200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:15004200-15006400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:15004400-15005200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:15004400-15005800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:15005200-15009200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:15005800-15009200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:15006000-15009200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:15006400-15009200	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr6:15006400-15009200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:15006600-15009200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:15006600-15009200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links