Variant report

Variant	nsv970901
Chromosome Location	chr7:78754482-78755677
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNAI1-8	chr7:78754055-78755066	NONHSAT121697

Extended variants
information (count: 22 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182734779	chr7:78754483-78754484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs557173369	chr7:78754498-78754499	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs140282728	chr7:78754516-78754517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs374819272	chr7:78754562-78754563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559347027	chr7:78754575-78754576	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs530250376	chr7:78754592-78754593	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs573095817	chr7:78754660-78754661	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs73369361	chr7:78754670-78754671	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs536016022	chr7:78754769-78754770	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs376320433	chr7:78754773-78754774	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs187366629	chr7:78754810-78754811	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs550288534	chr7:78754812-78754813	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs564336142	chr7:78754824-78754825	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs533387704	chr7:78754830-78754831	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs547178651	chr7:78754857-78754858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs567004400	chr7:78754874-78754875	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs144234395	chr7:78754898-78754899	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs549095957	chr7:78754968-78754969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs569303210	chr7:78754988-78754989	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs192475394	chr7:78755013-78755014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs10272193	chr7:78755035-78755036	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs578152220	chr7:78755050-78755051	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Biliary cancer	19435499	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164920	CNVD
Prostate cancer	18632612	CNVD
Neurodevelopmental disorder	22521361	CNVD
Williams Syndrome	20824207	CNVD
Metanephric adenoma	20802469	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Williams-beuren syndrome	16826523	CNVD
Schizophrenia	20838587	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Olfactory neuroblastoma	18408657	CNVD
Wilms tumour	19318497	CNVD
Multiple myeloma	16616336	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Schizophrenia	17879154	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	20858243	CNVD
Glioma	20126413	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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