Variant report

Variant	nsv970923
Chromosome Location	chr7:102810814-102811314
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3959192	chr7:102810842-102810843	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs567273602	chr7:102810843-102810844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540611140	chr7:102810872-102810873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs3987941	chr7:102810873-102810874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537898703	chr7:102810890-102810891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549600618	chr7:102810901-102810902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs571364410	chr7:102810991-102810992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2411085	chr7:102811031-102811032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565143381	chr7:102811063-102811064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558362507	chr7:102811065-102811066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2411086	chr7:102811075-102811076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs534245022	chr7:102811076-102811077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2411087	chr7:102811082-102811083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs145723240	chr7:102811095-102811096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62480085	chr7:102811120-102811121	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs2411088	chr7:102811123-102811124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573710310	chr7:102811140-102811141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200949290	chr7:102811167-102811168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs544239670	chr7:102811168-102811169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2411089	chr7:102811176-102811177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs2411090	chr7:102811209-102811210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2411091	chr7:102811230-102811231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs3987922	chr7:102811289-102811290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200904538	chr7:102811304-102811305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539417240	chr7:102811305-102811306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374145612	chr7:102811306-102811307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	19907438	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Pancreatic cancer	17952125	CNVD
Glioblastoma multiforme	21510904	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102808200-102812200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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