Variant report

Variant	nsv970961
Chromosome Location	chr7:149587973-149599154
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP6V0E2-4	chr7:149587828-149588505	ENSG00000273011.1

Extended variants
information (count: 26 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4582467	chr7:149588017-149588018	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs2689444	chr7:149588041-149588042	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs553086221	chr7:149588075-149588076	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs148976163	chr7:149588085-149588086	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs73170103	chr7:149588110-149588111	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs62492847	chr7:149588125-149588126	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs115492015	chr7:149588126-149588127	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs545246596	chr7:149588172-149588173	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs565331081	chr7:149588204-149588205	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs575905940	chr7:149588209-149588210	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs544529403	chr7:149588210-149588211	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs560959331	chr7:149588289-149588290	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs529676530	chr7:149588295-149588296	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs533665884	chr7:149588311-149588312	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs200405768	chr7:149588355-149588356	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs546601260	chr7:149588381-149588382	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs560317010	chr7:149588383-149588384	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs187910797	chr7:149588424-149588425	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs4725317	chr7:149588429-149588430	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs28688587	chr7:149588474-149588475	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs2626754	chr7:149588492-149588493	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs2449727	chr7:149588500-149588501	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs2449728	chr7:149588510-149588511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199655586	chr7:149588545-149588546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs3864464	chr7:149588548-149588549	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs571036179	chr7:149588587-149588588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Melanoma	20877625	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149581000-149588000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr7:149584000-149588000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:149584000-149588600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:149584800-149588200	Weak transcription	Pancreas	Pancrea
5	chr7:149588000-149588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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