Variant report

Variant	nsv970965
Chromosome Location	chr7:149918743-149935376
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:149757556..149758057-chr7:149919306..149919858,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC61-5	chr7:149929649-149932634	NONHSAT124098
2	lnc-ACTR3C-1	chr7:149927175-149927545	XLOC_006645
3	lnc-LRRC61-6	chr7:149920552-149920586	NONHSAT124097
4	lnc-ACTR3C-1	chr7:149929650-149932342	XLOC_006645
5	lnc-LRRC61-5	chr7:149927174-149927585	NONHSAT124098
6	lnc-ACTR3C-1	chr7:149930124-149932342	XLOC_006645
7	lnc-LRRC61-6	chr7:149920801-149921193	NONHSAT124097
8	lnc-LRRC61-5	chr7:149929034-149929094	NONHSAT124098
9	lnc-ACTR3C-1	chr7:149934645-149934670	XLOC_006645
10	lnc-ACTR3C-1	chr7:149934645-149934873	XLOC_006645
11	lnc-LRRC61-5	chr7:149924600-149925721	NONHSAT124098
12	lnc-LRRC61-5	chr7:149934644-149934873	NONHSAT124098
13	lnc-LRRC61-5	chr7:149927946-149928590	NONHSAT124098
14	lnc-LRRC61-5	chr7:149922268-149923842	NONHSAT124098

No data

Variant related genes	Relation type
ALDOA	miRNA target sites
SMURF2	miRNA target sites

Extended variants
information (count: 299 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192335567	chr7:149918806-149918807	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs77947829	chr7:149918812-149918813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs187754872	chr7:149918816-149918817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs192225187	chr7:149918821-149918822	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs184611093	chr7:149918954-149918955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs543617642	chr7:149918984-149918985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188629430	chr7:149918993-149918994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573396498	chr7:149919000-149919001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200688746	chr7:149920563-149920564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs201701847	chr7:149920568-149920569	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs557258586	chr7:149920575-149920576	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs564951606	chr7:149920885-149920886	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs144774886	chr7:149920894-149920895	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs2533205	chr7:149920939-149920940	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs114465878	chr7:149921009-149921010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs529807808	chr7:149921010-149921011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs2622215	chr7:149921015-149921016	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs186276297	chr7:149921037-149921038	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs2373778	chr7:149921063-149921064	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs2373777	chr7:149921071-149921072	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs560133057	chr7:149921079-149921080	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs528576730	chr7:149921124-149921125	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs2622214	chr7:149921143-149921144	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs189926045	chr7:149921159-149921160	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs200625917	chr7:149921167-149921168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs4317487	chr7:149921171-149921172	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs535510500	chr7:149922299-149922300	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs7807807	chr7:149922366-149922367	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs183777510	chr7:149922393-149922394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs554592020	chr7:149922439-149922440	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs199656807	chr7:149922505-149922506	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs73725997	chr7:149922524-149922525	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs539437445	chr7:149922526-149922527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs553801987	chr7:149922536-149922537	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs142636578	chr7:149922585-149922586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs545604762	chr7:149922601-149922602	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs7808153	chr7:149922616-149922617	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs192462171	chr7:149922641-149922642	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs2907688	chr7:149922690-149922691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs182551629	chr7:149922703-149922704	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs544340266	chr7:149922740-149922741	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs561322722	chr7:149922761-149922762	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs186832035	chr7:149922769-149922770	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs576514046	chr7:149922820-149922821	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs11982709	chr7:149922843-149922844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs559546067	chr7:149922857-149922858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs560629427	chr7:149922893-149922894	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs532704503	chr7:149922895-149922896	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs552799095	chr7:149922928-149922929	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs191672501	chr7:149922946-149922947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Congenital long qt syndrome	19214780	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149918800-149919000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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