Variant report

Variant	nsv971014
Chromosome Location	chr7:61073587-61078781
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 657 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:657 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78369750	chr7:61073607-61073608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565156125	chr7:61073608-61073609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201972656	chr7:61073613-61073614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs574694904	chr7:61073618-61073619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs550897151	chr7:61073629-61073630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562455708	chr7:61073631-61073632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199921156	chr7:61073655-61073656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9768462	chr7:61073658-61073659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs548283858	chr7:61073661-61073662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs9770001	chr7:61073666-61073667	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs191173982	chr7:61073668-61073669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs73697675	chr7:61073670-61073671	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs201092094	chr7:61073687-61073688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200915068	chr7:61073690-61073691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201889039	chr7:61073704-61073705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs571862282	chr7:61073711-61073712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs113898136	chr7:61073725-61073726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538961339	chr7:61073729-61073730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201194956	chr7:61073744-61073745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201735132	chr7:61073750-61073751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113162134	chr7:61073767-61073768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113205487	chr7:61073776-61073777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs557272910	chr7:61073785-61073786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs71548945	chr7:61073788-61073789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536275277	chr7:61073789-61073790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs140422724	chr7:61073797-61073798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111890549	chr7:61073809-61073810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9314243	chr7:61073814-61073815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573273948	chr7:61073818-61073819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138567012	chr7:61073825-61073826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139842268	chr7:61073826-61073827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs564937214	chr7:61073831-61073832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146538201	chr7:61073835-61073836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs113883815	chr7:61073836-61073837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs577006219	chr7:61073841-61073842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111956993	chr7:61073842-61073843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111248546	chr7:61073851-61073852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201195956	chr7:61073852-61073853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs562797071	chr7:61073870-61073871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529684485	chr7:61073885-61073886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541860406	chr7:61073888-61073889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs377134462	chr7:61073892-61073893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560248116	chr7:61073894-61073895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs367915759	chr7:61073912-61073913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs74836418	chr7:61073915-61073916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552295464	chr7:61073921-61073922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs571740251	chr7:61073922-61073923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532774895	chr7:61073929-61073930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs376174226	chr7:61073930-61073931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs368872659	chr7:61073932-61073933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61073400-61079000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:61074400-61074600	ZNF genes & repeats	Pancreas	Pancrea
3	chr7:61074600-61079000	Weak transcription	Pancreas	Pancrea
4	chr7:61077400-61079000	Weak transcription	Fetal Heart	heart
5	chr7:61078600-61079000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links