Variant report

Variant	nsv971193
Chromosome Location	chr7:40075881-40197955
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1678)
CpG islands
(count:1099)
Chromatin interactive
region (count:69)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1678 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:40163349-40163518	HepG2	liver:	n/a	n/a
2	ARID3A	chr7:40162343-40162462	HepG2	liver:	n/a	n/a
3	ARID3A	chr7:40110475-40110675	K562	blood:	n/a	n/a
4	ARID3A	chr7:40098322-40098610	K562	blood:	n/a	n/a
5	ARID3A	chr7:40138413-40138773	HepG2	liver:	n/a	n/a
6	ARID3A	chr7:40092188-40092405	HepG2	liver:	n/a	n/a
7	ARID3A	chr7:40134894-40135287	HepG2	liver:	n/a	n/a
8	ARID3A	chr7:40135727-40135825	HepG2	liver:	n/a	n/a
9	ARID3A	chr7:40139011-40139191	HepG2	liver:	n/a	n/a
10	ARID3A	chr7:40174061-40174516	HepG2	liver:	n/a	n/a
11	ARID3A	chr7:40174131-40174567	K562	blood:	n/a	n/a
12	ATF1	chr7:40117561-40117768	K562	blood:	n/a	n/a
13	ATF2	chr7:40174002-40174636	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr7:40174016-40174606	GM12878	blood:	n/a	n/a
15	ATF2	chr7:40173849-40174728	GM12878	blood:	n/a	n/a
16	ATF2	chr7:40173956-40174637	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF3	chr7:40173901-40174629	A549	lung:	n/a	n/a
18	ATF3	chr7:40173976-40174641	A549	lung:	n/a	n/a
19	ATF3	chr7:40096977-40097167	K562	blood:	n/a	n/a
20	BACH1	chr7:40078099-40078178	K562	blood:	n/a	n/a
21	BACH1	chr7:40098271-40098628	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr7:40098245-40098605	K562	blood:	n/a	n/a
23	BACH1	chr7:40134033-40134217	K562	blood:	n/a	n/a
24	BACH1	chr7:40174222-40174905	H1-hESC	embryonic stem cell:	n/a	n/a
25	BATF	chr7:40181515-40181798	GM12878	blood:	n/a	chr7:40181662-40181673
26	BATF	chr7:40174134-40174601	GM12878	blood:	n/a	chr7:40174245-40174254
27	BCL11A	chr7:40174137-40174355	GM12878	blood:	n/a	chr7:40174323-40174332
28	BCL3	chr7:40173835-40174647	A549	lung:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
29	BCL3	chr7:40173988-40174683	A549	lung:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
30	BCLAF1	chr7:40174018-40174592	K562	blood:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
31	BCLAF1	chr7:40173790-40174695	GM12878	blood:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
32	BCLAF1	chr7:40173871-40174728	GM12878	blood:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
33	BCLAF1	chr7:40173997-40174755	K562	blood:	n/a	chr7:40174553-40174566 chr7:40174323-40174332
34	BHLHE40	chr7:40133785-40133889	K562	blood:	n/a	n/a
35	BHLHE40	chr7:40096875-40097314	K562	blood:	n/a	n/a
36	BHLHE40	chr7:40174090-40174761	GM12878	blood:	n/a	n/a
37	BHLHE40	chr7:40173931-40174967	K562	blood:	n/a	n/a
38	BHLHE40	chr7:40174103-40175029	HepG2	liver:	n/a	chr7:40174959-40174975
39	BHLHE40	chr7:40174170-40174571	A549	lung:	n/a	n/a
40	BHLHE40	chr7:40098417-40098988	K562	blood:	n/a	n/a
41	BHLHE40	chr7:40092120-40092431	GM12878	blood:	n/a	n/a
42	BRCA1	chr7:40174122-40174683	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr7:40174088-40174514	GM12878	blood:	n/a	n/a
44	BRCA1	chr7:40174112-40174925	HepG2	liver:	n/a	n/a
45	BRCA1	chr7:40173982-40174672	H1-hESC	embryonic stem cell:	n/a	n/a
46	CBX3	chr7:40181450-40182008	HCT-116	colon:	n/a	n/a
47	CBX3	chr7:40173829-40174749	K562	blood:	n/a	n/a
48	CBX3	chr7:40173906-40174948	HCT-116	colon:	n/a	n/a
49	CBX3	chr7:40174090-40174469	K562	blood:	n/a	n/a
50	CBX3	chr7:40096872-40097273	K562	blood:	n/a	n/a

(count:1099 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:40174274-40174324	NH-A	brain:	n/a
2	chr7:40174274-40174324	NH-A	brain:	n/a
3	chr7:40173613-40173663	HCF	heart:	n/a
4	chr7:40171342-40171392	SK-N-MC	brain:	n/a
5	chr7:40174843-40174893	SK-N-SH	brain:	n/a
6	chr7:40174274-40174324	HCM	heart:	n/a
7	chr7:40098119-40098169	Jurkat	blood:	n/a
8	chr7:40174463-40174513	ovcar-3	ovarian:	n/a
9	chr7:40174490-40174540	ovcar-3	ovarian:	n/a
10	chr7:40174327-40174377	HNPCEpiC	eye:	n/a
11	chr7:40174653-40174703	HepG2	liver:	n/a
12	chr7:40174463-40174513	GM12878	blood:	n/a
13	chr7:40174330-40174380	ProgFib	skin:	n/a
14	chr7:40174270-40174320	MCF10A-Er-Src	breast:	n/a
15	chr7:40174410-40174460	PANC-1	pancreas:	n/a
16	chr7:40173882-40173932	GM06990	blood:	n/a
17	chr7:40098119-40098169	K562	blood:	n/a
18	chr7:40175036-40175086	A549	lung:	n/a
19	chr7:40174191-40174241	T-47D	breast:	n/a
20	chr7:40174843-40174893	RPTEC	kidney:	n/a
21	chr7:40174270-40174320	PFSK-1	brain:	n/a
22	chr7:40174327-40174377	Jurkat	blood:	n/a
23	chr7:40174327-40174377	SK-N-MC	brain:	n/a
24	chr7:40174463-40174513	NHDF-neo	bronchial:	n/a
25	chr7:40174274-40174324	PFSK-1	brain:	n/a
26	chr7:40174225-40174275	Jurkat	blood:	n/a
27	chr7:40174490-40174540	HepG2	liver:	n/a
28	chr7:40171342-40171392	GM12891	blood:	n/a
29	chr7:40098119-40098169	T-47D	breast:	n/a
30	chr7:40174274-40174324	HPAEpiC	pulmonary alveolar:	n/a
31	chr7:40174843-40174893	NT2-D1	testis:	n/a
32	chr7:40177071-40177121	Jurkat	blood:	n/a
33	chr7:40174191-40174241	NH-A	brain:	n/a
34	chr7:40174463-40174513	RPTEC	kidney:	n/a
35	chr7:40174490-40174540	SK-N-MC	brain:	n/a
36	chr7:40174653-40174703	HIPEpiC	eye:	n/a
37	chr7:40172521-40172571	AG10803	skin:	n/a
38	chr7:40171342-40171392	NHBE	bronchial:	n/a
39	chr7:40175036-40175086	HRPEpiC	eye:	n/a
40	chr7:40174274-40174324	SK-N-MC	brain:	n/a
41	chr7:40174490-40174540	HRCEpiC	kidney:	n/a
42	chr7:40174490-40174540	AG10803	skin:	n/a
43	chr7:40174327-40174377	ProgFib	skin:	n/a
44	chr7:40173613-40173663	HRPEpiC	eye:	n/a
45	chr7:40173613-40173663	Hela-S3	cervix:	n/a
46	chr7:40174843-40174893	GM12878	blood:	n/a
47	chr7:40174327-40174377	AG04449	skin:	fetal
48	chr7:40174843-40174893	PrEC	prostate:	n/a
49	chr7:40175036-40175086	GM12878	blood:	n/a
50	chr7:40174225-40174275	ovcar-3	ovarian:	n/a

(count:69 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr7:40135569..40137778-chr7:40140510..40143010,2	MCF-7	breast:
2	chr7:39989467..39991419-chr7:40087056..40089179,2	K562	blood:
3	chr7:40132356..40134649-chr7:40137450..40139023,2	K562	blood:
4	chr7:40105682..40108224-chr7:40109570..40112415,2	K562	blood:
5	chr7:40109167..40111821-chr7:40114946..40117693,2	K562	blood:
6	chr7:40088024..40089904-chr7:40091053..40093923,2	MCF-7	breast:
7	chr7:40167562..40171134-chr7:40171634..40175290,4	MCF-7	breast:
8	chr7:40109167..40111821-chr7:40114946..40117693,2	K562	blood:
9	chr7:40080571..40083008-chr7:40084879..40087447,2	MCF-7	breast:
10	chr7:39987662..39991169-chr7:40080646..40083080,4	MCF-7	breast:
11	chr7:40162391..40165100-chr7:40174021..40176292,2	K562	blood:
12	chr7:40090602..40093136-chr7:40095056..40097125,2	K562	blood:
13	chr7:39987767..39989590-chr7:40096379..40098788,2	K562	blood:
14	chr7:40093916..40096892-chr7:40098882..40101191,2	K562	blood:
15	chr7:39874655..39876948-chr7:40167976..40170537,2	MCF-7	breast:
16	chr7:40167562..40171134-chr7:40171634..40175290,4	MCF-7	breast:
17	chr7:40084993..40087566-chr7:40090698..40092927,2	K562	blood:
18	chr7:39988254..39991540-chr7:40078571..40080480,3	MCF-7	breast:
19	chr7:39989838..39991458-chr7:40172726..40174247,2	K562	blood:
20	chr7:39987621..39991955-chr7:40089379..40093722,6	MCF-7	breast:
21	chr7:10979872..10980668-chr7:40173740..40174309,2	Hela-S3	cervix:
22	chr5:72111975..72112885-chr7:40174048..40174680,2	Hela-S3	cervix:
23	chr7:40115479..40117853-chr7:40121950..40124630,2	MCF-7	breast:
24	chr15:93351708..93352444-chr7:40174029..40174595,2	Hela-S3	cervix:
25	chr7:40098014..40099578-chr7:40101201..40104032,2	K562	blood:
26	chr7:39619647..39620204-chr7:40092201..40092766,2	K562	blood:
27	chr7:40090602..40093136-chr7:40095056..40097125,2	K562	blood:
28	chr7:40135569..40137778-chr7:40140510..40143010,2	MCF-7	breast:
29	chr7:40162725..40164570-chr7:40170579..40173215,2	MCF-7	breast:
30	chr7:40157051..40160727-chr7:40165883..40170112,5	K562	blood:
31	chr7:40183573..40185979-chr7:40191227..40192891,2	K562	blood:
32	chr7:40093916..40096892-chr7:40098882..40101191,2	K562	blood:
33	chr7:40165267..40167211-chr7:40171970..40173571,2	K562	blood:
34	chr7:39989128..39990851-chr7:40089712..40092117,2	K562	blood:
35	chr7:40084390..40086552-chr7:40091089..40093935,3	K562	blood:
36	chr7:40080571..40083008-chr7:40084879..40087447,2	MCF-7	breast:
37	chr7:40117676..40119529-chr7:40167964..40170464,2	K562	blood:
38	chr7:40130215..40132846-chr7:40133657..40135422,2	K562	blood:
39	chr7:40132356..40134649-chr7:40137450..40139023,2	K562	blood:
40	chr7:40139705..40142810-chr7:40143193..40146222,3	K562	blood:
41	chr7:40131598..40134106-chr7:40137449..40139937,2	MCF-7	breast:
42	chr7:39988782..39993568-chr7:40089798..40094373,7	MCF-7	breast:
43	chr7:40088024..40089904-chr7:40091053..40093923,2	MCF-7	breast:
44	chr7:40157076..40159444-chr7:40173522..40176316,2	K562	blood:
45	chr7:40098014..40099578-chr7:40101201..40104032,2	K562	blood:
46	chr7:39957754..39959391-chr7:40170682..40173574,2	MCF-7	breast:
47	chr7:40084993..40087566-chr7:40090698..40092927,2	K562	blood:
48	chr7:40109257..40111529-chr7:40116739..40118703,2	K562	blood:
49	chr7:40183573..40185979-chr7:40191227..40192891,2	K562	blood:
50	chr7:39987485..39989678-chr7:40173138..40176244,4	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDK13-4	chr7:40192631-40193750	NONHSAT120248
2	lnc-C7orf10-5	chr7:40135564-40136731	NONHSAT120243
3	lnc-C7orf10-3	chr7:40174482-40174719	NONHSAT120247
4	lnc-CDK13-4	chr7:40191212-40191314	NONHSAT120248
5	lnc-CDK13-4	chr7:40192040-40192296	NONHSAT120248
6	lnc-CDK13-3	chr7:40155284-40155542	NONHSAT120244
7	lnc-C7orf10-4	chr7:40172588-40174207	NONHSAT120246

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CDK13	hsa-miR-133b	chr7:40134927-40134933
2	CDK13	hsa-miR-133b	chr7:40134910-40134934

Variant related genes	Relation type
CDK13	TF binding region
ENSG00000199273	TF binding region
SUGCT	TF binding region
ENSG00000270577	TF binding region
ENSG00000248711	TF binding region
ENSG00000273444	TF binding region
MPLKIP	TF binding region
CDK13	CpG island
ENSG00000199273	CpG island
SUGCT	CpG island
ENSG00000270577	CpG island
ENSG00000248711	CpG island
ENSG00000273444	CpG island
MPLKIP	CpG island
ENSG00000270577	chromatin interactions
ENSG00000199273	chromatin interactions
ENSG00000271185	chromatin interactions
ENSG00000168303	chromatin interactions
ENSG00000258922	chromatin interactions
ENSG00000189043	chromatin interactions
ENSG00000259826	chromatin interactions
ENSG00000088325	chromatin interactions
ENSG00000083312	chromatin interactions
ENSG00000065883	chromatin interactions
ENSG00000267882	chromatin interactions
ENSG00000175600	chromatin interactions
ENSG00000249085	chromatin interactions
ENSG00000101040	chromatin interactions

Extended variants
information (count: 4545 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:4545 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372264064	chr7:40075895-40075896	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs77961773	chr7:40075908-40075909	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs527447248	chr7:40075937-40075938	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs71536661	chr7:40076104-40076105	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs184569992	chr7:40076126-40076127	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189937210	chr7:40076153-40076154	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192195583	chr7:40076154-40076155	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs374908977	chr7:40076155-40076156	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113466598	chr7:40076156-40076157	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569642659	chr7:40076177-40076178	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184618314	chr7:40076205-40076206	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555263393	chr7:40076229-40076230	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565374823	chr7:40076235-40076236	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190301481	chr7:40076247-40076248	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs17537992	chr7:40076290-40076291	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577243292	chr7:40076291-40076292	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs17537999	chr7:40076313-40076314	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs368952586	chr7:40076357-40076358	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374386708	chr7:40076399-40076400	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141037527	chr7:40076432-40076433	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562050499	chr7:40076439-40076440	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377745857	chr7:40076468-40076469	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575986731	chr7:40076472-40076473	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529155159	chr7:40076489-40076490	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs541824399	chr7:40076503-40076504	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561645953	chr7:40076520-40076521	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs184739866	chr7:40076576-40076577	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188748717	chr7:40076578-40076579	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs369472464	chr7:40076581-40076582	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs369394380	chr7:40076641-40076642	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs558927823	chr7:40076649-40076650	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs181605374	chr7:40076667-40076668	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533004512	chr7:40076692-40076693	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs186206674	chr7:40076695-40076696	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs569778143	chr7:40076722-40076723	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs577289730	chr7:40076755-40076756	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs374176501	chr7:40076781-40076782	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs113331228	chr7:40076806-40076807	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs550823925	chr7:40076815-40076816	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs200267814	chr7:40076875-40076876	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs549047972	chr7:40076878-40076879	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs144742912	chr7:40076895-40076896	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs146580719	chr7:40076950-40076951	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs568775705	chr7:40076989-40076990	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs773401	chr7:40077022-40077023	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs699513	chr7:40077032-40077033	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs556191231	chr7:40077058-40077059	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs576174559	chr7:40077080-40077081	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs76430871	chr7:40077109-40077110	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs141274344	chr7:40077151-40077152	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	17237825	CNVD
Breast cancer	17899364	CNVD
Breast cancer	20409316	CNVD
Acute monocytic leukemia	16498392	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	19455253	CNVD
Glioblastoma multiforme	22286061	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Gastric cancer	24379144	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD
Gastric cancer	22014070	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:2269 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40020400-40077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:40025800-40082200	Weak transcription	Spleen	Spleen
3	chr7:40026600-40096800	Weak transcription	Right Ventricle	heart
4	chr7:40028000-40077800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:40028000-40127800	Weak transcription	Colonic Mucosa	Colon
6	chr7:40043600-40076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:40043600-40079800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:40043600-40095200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:40043600-40127800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:40044400-40096000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:40047600-40102600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:40048000-40102400	Weak transcription	HMEC	breast
13	chr7:40048000-40102400	Weak transcription	NHEK	skin
14	chr7:40049000-40085600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:40049000-40085800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:40049000-40096200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:40055600-40126400	Weak transcription	Aorta	Aorta
18	chr7:40055800-40077000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:40055800-40077000	Weak transcription	Psoas Muscle	Psoas
20	chr7:40055800-40082600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:40055800-40092200	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:40055800-40097000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:40055800-40102400	Weak transcription	NHLF	lung
24	chr7:40055800-40110000	Weak transcription	Gastric	stomach
25	chr7:40055800-40127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:40055800-40127600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:40056000-40092200	Weak transcription	Brain Substantia Nigra	brain
28	chr7:40056000-40097000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:40056000-40097800	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:40056000-40097800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:40056000-40105400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:40056000-40112200	Weak transcription	HepG2	liver
33	chr7:40056200-40128600	Weak transcription	A549	lung
34	chr7:40058400-40077000	Weak transcription	Osteobl	bone
35	chr7:40058400-40101800	Weak transcription	Fetal Brain Male	brain
36	chr7:40058600-40126800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:40058800-40081200	Weak transcription	Fetal Lung	lung
38	chr7:40059000-40125200	Weak transcription	Fetal Kidney	kidney
39	chr7:40059200-40084800	Weak transcription	Hela-S3	cervix
40	chr7:40059400-40076800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:40059400-40092800	Weak transcription	HSMMtube	muscle
42	chr7:40060200-40077000	Weak transcription	HSMM	muscle
43	chr7:40060200-40088400	Weak transcription	HUVEC	blood vessel
44	chr7:40060200-40102400	Weak transcription	NHDF-Ad	bronchial
45	chr7:40060400-40098800	Weak transcription	Brain Anterior Caudate	brain
46	chr7:40064400-40084800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:40067200-40085400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr7:40067400-40088600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr7:40067400-40096000	Weak transcription	NH-A	brain
50	chr7:40067600-40096800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links