Variant report
| Variant | nsv971297 |
|---|---|
| Chromosome Location | chr8:35381031-35383085 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs397891353 | chr8:35381097-35381098 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs33917742 | chr8:35381116-35381117 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs60810562 | chr8:35381117-35381118 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs535135086 | chr8:35381170-35381171 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs372851772 | chr8:35381172-35381173 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs553178884 | chr8:35381184-35381185 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs568497388 | chr8:35381226-35381227 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs112211303 | chr8:35381393-35381394 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs573287694 | chr8:35381410-35381411 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs535848893 | chr8:35381478-35381479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs554945145 | chr8:35381479-35381480 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs576405414 | chr8:35381922-35381923 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs113548648 | chr8:35382159-35382160 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs543710039 | chr8:35382215-35382216 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs540578349 | chr8:35382225-35382226 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs558730899 | chr8:35382231-35382232 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs71513761 | chr8:35382248-35382249 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs576944554 | chr8:35382291-35382292 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs541147947 | chr8:35382428-35382429 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs559179443 | chr8:35382437-35382438 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs2293989 | chr8:35382540-35382541 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs370427119 | chr8:35382643-35382644 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs541433191 | chr8:35382656-35382657 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs562898535 | chr8:35382658-35382659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs531132201 | chr8:35382707-35382708 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs532686106 | chr8:35382766-35382767 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs550787337 | chr8:35382794-35382795 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs531403895 | chr8:35382798-35382799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs571061168 | chr8:35382802-35382803 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs528657701 | chr8:35382854-35382855 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs187922374 | chr8:35382878-35382879 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs562376644 | chr8:35382880-35382881 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs568560588 | chr8:35382905-35382906 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs535913755 | chr8:35382974-35382975 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs551013490 | chr8:35383003-35383004 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs373836784 | chr8:35383007-35383008 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs569238114 | chr8:35383009-35383010 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs537383919 | chr8:35383019-35383020 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs377478767 | chr8:35383049-35383050 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs558549584 | chr8:35383058-35383059 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs577012716 | chr8:35383064-35383065 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:118)
| Disease | PMID | Source |
|---|---|---|
| Salivary gland tumor | 18059337 | CNVD |
| Breast cancer | 17133270 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Melanoma | 18172304 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Chronic lymphocytic leukemia | 18922857 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Cancer | 21637783 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 22429812 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Prostate cancer | 21088497 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Breast cancer | 20940404 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Gastric cancer | 17167181 | CNVD |
| Prostate cancer | 16705090 | CNVD |
| 8p-syndrome | 17576883 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Lung adenocarcinoma | 19525976 | CNVD |
| Lung cancer | 19525976 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Cancer | 16751803 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Autism | 19415332 | CNVD |
| Malaria | 21533027 | CNVD |
| Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Breast cancer | 21245420 | CNVD |
| Acute lymphoblastic leukemia | 21248843 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Breast cancer | 21858162 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Liver carcinoma | 19366792 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Seminomas | 18059402 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Gastrointestinal stromal cancer | 19259404 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Immune disease | 21572526 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Kallmann Syndrome 2 | 22470819 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Pancreatic cancer | 21811587 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Developmental delay | 21373258 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Melanoma | 20688739 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Breast cancer | 21806811 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Bladder cancer | 19088036 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Breast cancer | 20459607 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Colorectal cancer | 16912164 | CNVD |
| Neuroticism | 17667963 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Breast cancer | 17001308 | CNVD |
| Breast cancer | 17157792 | CNVD |
| Cancer | 17001308 | CNVD |
| Cancer | 18840272 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Chordoma | 18071362 | CNVD |
| Urothelial carcinoma | 18382360 | CNVD |
| Ductal carcinoma | 18381933 | CNVD |
| Breast cancer | 21328542 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| Lung cancer | 17925434 | CNVD |
| Uveal melanoma | 20484589 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Cancer | 20164919 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:35356400-35391200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr8:35359800-35397200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 3 | chr8:35383000-35391200 | Weak transcription | H1 Cell Line | embryonic stem cell |
