Variant report

Variant	nsv971541
Chromosome Location	chr7:124185500-124192244
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574426184	chr7:124189652-124189653	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs543339182	chr7:124189683-124189684	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs533480304	chr7:124189714-124189715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs12706612	chr7:124189726-124189727	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs528459139	chr7:124189746-124189747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs146733955	chr7:124189784-124189785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs74757586	chr7:124189785-124189786	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530985442	chr7:124189794-124189795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs182069133	chr7:124189883-124189884	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs142306586	chr7:124190000-124190001	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs114414423	chr7:124190057-124190058	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs546475966	chr7:124190095-124190096	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs1404408	chr7:124190104-124190105	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs186201685	chr7:124190105-124190106	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs1404409	chr7:124190122-124190123	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs549358634	chr7:124190158-124190159	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558482584	chr7:124190200-124190201	Active TSS Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs372413072	chr7:124190206-124190207	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs567963373	chr7:124190220-124190221	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs568867894	chr7:124190246-124190247	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs537930982	chr7:124190251-124190252	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs35716565	chr7:124190252-124190253	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs190184412	chr7:124190275-124190276	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs574262207	chr7:124190286-124190287	Flanking Active TSS Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs567215331	chr7:124190452-124190453	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs1949834	chr7:124190484-124190485	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs553404289	chr7:124190495-124190496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546229747	chr7:124190511-124190512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs573452730	chr7:124190555-124190556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs545073628	chr7:124190560-124190561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs565275358	chr7:124190572-124190573	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	21635232	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	20164919	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124189600-124189800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr7:124189800-124190000	Enhancers	Brain Substantia Nigra	brain
3	chr7:124189800-124190200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:124189800-124190600	Enhancers	Brain Hippocampus Middle	brain
5	chr7:124190000-124190200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:124190000-124190200	Active TSS	Brain Angular Gyrus	brain
7	chr7:124190000-124190400	Active TSS	Brain Substantia Nigra	brain
8	chr7:124190200-124190400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:124190200-124190400	Flanking Active TSS	Brain Angular Gyrus	brain

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