Variant report

Variant	nsv971862
Chromosome Location	chr10:37694928-37716896
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:36262650..36263629-chr10:37706794..37707324,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30A-5	chr10:37707165-37730322	NONHSAT012779

Extended variants
information (count: 358 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:358 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376897945	chr10:37694947-37694948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs539996261	chr10:37694962-37694963	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs184070525	chr10:37694966-37694967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs147636417	chr10:37695017-37695018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs61140604	chr10:37695122-37695123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs552471506	chr10:37695136-37695137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs571682412	chr10:37695139-37695140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs555771212	chr10:37695163-37695164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs188416274	chr10:37695190-37695191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs112343341	chr10:37695199-37695200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs113209310	chr10:37695230-37695231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs558175336	chr10:37695259-37695260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs60661309	chr10:37695343-37695344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs575553580	chr10:37695417-37695418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs556754305	chr10:37695550-37695551	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs151186303	chr10:37695666-37695667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs140205247	chr10:37695696-37695697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs571710097	chr10:37695699-37695700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs540670002	chr10:37695714-37695715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs560535252	chr10:37695745-37695746	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs574509875	chr10:37695785-37695786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs547540538	chr10:37701245-37701246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536768104	chr10:37701252-37701253	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs548802340	chr10:37701274-37701275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs111946432	chr10:37701275-37701276	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs540637622	chr10:37701327-37701328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs560522472	chr10:37701363-37701364	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs190715670	chr10:37701394-37701395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs200344182	chr10:37701396-37701397	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs183059246	chr10:37701425-37701426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs143071431	chr10:37701443-37701444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs116953321	chr10:37701454-37701455	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs187345546	chr10:37701491-37701492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs537897878	chr10:37701572-37701573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs10443978	chr10:37701587-37701588	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs368747712	chr10:37707200-37707201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs537393406	chr10:37707221-37707222	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs565283948	chr10:37707226-37707227	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs527763263	chr10:37707229-37707230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs547708765	chr10:37707231-37707232	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs567484101	chr10:37707259-37707260	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs556276526	chr10:37707301-37707302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs536568941	chr10:37707357-37707358	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs186950723	chr10:37707366-37707367	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs550012694	chr10:37707537-37707538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs576419593	chr10:37707541-37707542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs368588050	chr10:37707551-37707552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs142136745	chr10:37707563-37707564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs538292695	chr10:37707574-37707575	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs114644063	chr10:37707641-37707642	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Bipolar disorder	19114987	CNVD
Lung cancer	21569311	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37693400-37695800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr10:37701200-37701600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:37707600-37708600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:37710800-37711200	Active TSS	Fetal Heart	heart
5	chr10:37716600-37716800	ZNF genes & repeats	Right Atrium	heart
6	chr10:37716800-37717200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links