Variant report

Variant	nsv971872
Chromosome Location	chr10:22386395-22398112
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22392202..22394692-chr10:22609126..22611817,2	MCF-7	breast:
2	chr10:22291123..22293535-chr10:22390579..22394203,4	MCF-7	breast:
3	chr10:22387963..22390639-chr10:22608316..22610932,2	K562	blood:
4	chr10:22392525..22393206-chr10:22507186..22508102,2	MCF-7	breast:
5	chr10:22299995..22300511-chr10:22392433..22393197,2	K562	blood:
6	chr10:22393820..22395518-chr10:22421627..22424480,2	K562	blood:
7	chr10:22390658..22392555-chr10:22540780..22543076,2	MCF-7	breast:
8	chr10:22290858..22292546-chr10:22390293..22393012,2	MCF-7	breast:
9	chr10:22393772..22396494-chr10:22400221..22401954,2	MCF-7	breast:
10	chr10:22390324..22392291-chr10:22394986..22397075,2	MCF-7	breast:
11	chr10:22394672..22397312-chr10:22397566..22400012,2	MCF-7	breast:
12	chr10:22394672..22397312-chr10:22397566..22400012,2	MCF-7	breast:
13	chr10:22374255..22376560-chr10:22387023..22389158,2	K562	blood:
14	chr10:22390324..22392291-chr10:22394986..22397075,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136770	chromatin interactions
ENSG00000168283	chromatin interactions

Extended variants
information (count: 404 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:404 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs180938840	chr10:22387993-22387994	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs185169948	chr10:22387994-22387995	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs374166555	chr10:22388003-22388004	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs543354535	chr10:22388005-22388006	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs563841124	chr10:22388019-22388020	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs529476229	chr10:22388051-22388052	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs77072332	chr10:22388062-22388063	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs568111945	chr10:22388064-22388065	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs573701856	chr10:22388066-22388067	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs547025432	chr10:22388070-22388071	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs143846017	chr10:22388083-22388084	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs539321552	chr10:22388112-22388113	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs556054529	chr10:22388172-22388173	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs191212482	chr10:22388175-22388176	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs148649923	chr10:22388185-22388186	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs78540538	chr10:22388191-22388192	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs564725469	chr10:22388197-22388198	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs536336903	chr10:22388217-22388218	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs368780604	chr10:22388268-22388269	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs572486992	chr10:22388309-22388310	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs541420267	chr10:22388371-22388372	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs143254539	chr10:22388396-22388397	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs578084729	chr10:22388416-22388417	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs146251857	chr10:22388417-22388418	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs574342394	chr10:22388499-22388500	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs181096893	chr10:22388526-22388527	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs541847387	chr10:22388644-22388645	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs576658603	chr10:22388649-22388650	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs549355467	chr10:22388661-22388662	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs540846427	chr10:22388696-22388697	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs561808290	chr10:22388720-22388721	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs112604607	chr10:22388797-22388798	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs559147221	chr10:22388804-22388805	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs529804516	chr10:22388906-22388907	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs151012545	chr10:22388923-22388924	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs570081653	chr10:22388968-22388969	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs539056485	chr10:22388995-22388996	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs186331707	chr10:22389008-22389009	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs192046360	chr10:22389014-22389015	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs183362104	chr10:22389041-22389042	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs11012863	chr10:22389046-22389047	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs572479884	chr10:22389059-22389060	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs186384489	chr10:22389083-22389084	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs149784646	chr10:22389128-22389129	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs190783485	chr10:22389129-22389130	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs578038889	chr10:22389166-22389167	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs546386731	chr10:22389174-22389175	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs145704859	chr10:22389175-22389176	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs571847310	chr10:22389245-22389246	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs557627440	chr10:22389260-22389261	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22392000-22392400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:22392400-22393800	Enhancers	Fetal Stomach	stomach
3	chr10:22393800-22398600	Weak transcription	Fetal Stomach	stomach

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